1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttatctattttttttctatatgcaacacatgacaaaatagttagtactgaaaaagggtcaaataacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTGATGCACTAAGAGAGGCAGCCTTTGAGTATCAAGACCTGCTAAAATTAG
species | Oryza sativa |
transcript | LOC_Os11g01439.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|29667941|gb|CB664216.1|CB664216
genomic: GATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|29612706|gb|CB617719.1|CB617719
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|157651193|gb|EX450827.1|EX450827
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTA GTCGATGAGCGGGCAGTACEST: gi|29612723|gb|CB617736.1|CB617736
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTAC
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|38475765|gb|CF959898.1|CF959898
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|29668095|gb|CB664370.1|CB664370
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|58609462|gb|CK037495.1|CK037495
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAGCTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTEST: gi|29629417|gb|CB634426.1|CB634426
genomic: ACGATGTTGTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
EST: GTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTG GTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
genomic: GTTGCATTTGTAAATTGGCTTGATGAGGAACTATCCTTCTTGgtaagcttat ... aacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACT
tatgcaacacatgacaaaatagttagtactgaaaaagggtcaaataacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTGATGCACTAAGAGAGGCAGCCTTTGAGTATCAAGACCTGCTAAAATTAG
aaataac putative branch site (score: 2)
tcaaataacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttatctattttttttctatatgcaacacatgacaaaatagttagtactgaaaaagggtcaaataacattttagGTCGATGAGCGGGCAGTACTAAAGCACTTTGATTGGCCAGAGAGCAAAACTGATGCACTAAGAGAGGCAGCCTTTGAGTATCAAGACCTGCTAAAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG