1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtacccttctctcagttagtagtattactagtagttagcatatggttatatatgttgtgacatgatcatattcgaagctctctgtttaatttgttgcgagacgagtgtgcctagctgttggctagctaattaaccatgcatccaaccaaggagtaattaattaatgtttttgtgttggataatataatatttcagCTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCAACATTCTCGTTATATTCAACTGCCATCCTAGGACGAGTGGTAGAGCTAG
species | Oryza sativa |
transcript | LOC_Os10g42780.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTCTGTCATCATATCGTTTGCATTTTCAATGTTCAATCAGAGAAAG CTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCAEST: gi|29676079|gb|CB672354.1|CB672354
genomic: TTGGGTCTGTCATCATATCGTTTGCATTTTCAATGTTCAATCAGAGAAAGgtaggtaccc ... aatatttcagCTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCA
EST: TTGGGTCTGTCATCATATCGTTTGCATTTTCAATGTTCAATCAGAGAAAG CTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCA
genomic: TTGGGTCTGTCATCATATCGTTTGCATTTTCAATGTTCAATCAGAGAAAGgtaggtaccc ... aatatttcagCTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCA
tccaaccaaggagtaattaattaatgtttttgtgttggataatataatatttcagCTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCAACATTCTCGTTATATTCAACTGCCATCCTAGGACGAGTGGTAGAGCTAG
aattaat putative branch site (score: 3)
taattaattaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtacccttctctcagttagtagtattactagtagttagcatatggttatatatgttgtgacatgatcatattcgaagctctctgtttaatttgttgcgagacgagtgtgcctagctgttggctagctaattaaccatgcatccaaccaaggagtaattaattaatgtttttgtgttggataatataatatttcagCTTGTAAGGAGGCATGCAGCGGAAATTTTCACATCAATCGCTGTGGCATCAACATTCTCGTTATATTCAACTGCCATCCTAGGACGAGTGGTAGAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT