1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtctggggccatgttcttatggtgtatcggttattacctttggaatatctgcattgacctatacagtcttatgttctttaccactttaccttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTTCCAACGTGGATCTGAGTGCTTCAGATTTGATCAACCGGCTTTCTTTCC
species | Oryza sativa |
transcript | LOC_Os10g42420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|87022045|gb|CI259117.1|CI259117
genomic: CCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|88906383|gb|CI375455.1|CI375455
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: CAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|33654042|gb|CF276656.1|CF276656
genomic: CAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|58610590|gb|CK038302.1|CK038302
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: CTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|86489006|gb|CI131639.1|CI131639
genomic: CTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: TCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|58695054|gb|CK083741.1|CK083741
genomic: TCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTATCG GGATCTTCTGACATTTCAAGTGCTGATCTATTTGGTCATCEST: gi|86250851|gb|CI007714.1|CI007714
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATC
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|86495273|gb|CI137906.1|CI137906
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCCATAGTEST: gi|218500046|gb|FG955203.1|FG955203
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTEST: gi|86594982|gb|CI258236.1|CI258236
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
EST: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCG GGATCTTCTGCCATTTCAAGTGCTGGTCTATTTGGTCATCCAACCAATAGT
genomic: ACCAGGCCAGTTTTGAAAAGGAGGCTCAAGTTTCCCTCCAAAAGTTTTCGgtaagtattt ... cttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGT
atatctgcattgacctatacagtcttatgttctttaccactttaccttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTTCCAACGTGGATCTGAGTGCTTCAGATTTGATCAACCGGCTTTCTTTCC
cattgac putative branch site (score: 19)
ctttacctt putative PPT
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtctggggccatgttcttatggtgtatcggttattacctttggaatatctgcattgacctatacagtcttatgttctttaccactttaccttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTTCCAACGTGGATCTGAGTGCTTCAGATTTGATCAACCGGCTTTCTTTCC
- -ctggggc
- - - - - catgttc
- - - - - - - -tcttatg
- - - - - - - - - - - gtgtatc
- - - - - - - - - - - - - - - - - - - - - - - -atctgca