1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggttcagtataaactgcattgttaacatttcatattctactattaagggttcttttttctctgtagctgaactaatctcaccttgcaattcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGGATATGGGATATCTGCCGCCTTGATCTTGC
species | Oryza sativa |
transcript | LOC_Os10g41370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCTTCACAGAAACCCGTTGCAGACAAGCCCAACCCCAAGCAGGGAATTG GTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAEST: gi|87021836|gb|CI278003.1|CI278003
genomic: GCCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGgttagttgct ... tcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACA
EST: TTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTG GTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAEST: gi|300215608|gb|HO088234.1|HO088234
genomic: TTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGgttagttgct ... tcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACA
EST: GCCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTG GTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACA
genomic: GCCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGgttagttgct ... tcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACA
aagggttcttttttctctgtagctgaactaatctcaccttgcaattcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGGATATGGGATATCTGCCGCCTTGATCTTGC
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttcagtataaactgcattgttaacatttcatattctactattaagggttcttttttctctgtagctgaactaatctcaccttgcaattcatgtgcagGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGGATATGGGATATCTGCCGCCTTGATCTTGC
- - - - - - aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgca