1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataatgtctgaattagtggggcaatctgaatgtgcaaaactgcaaatcacattattggtttatagcctgcttactgatgcacatttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG
species | Oryza sativa |
transcript | LOC_Os10g36690.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88902474|gb|CI088012.1|CI088012
genomic: CTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: AATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87042149|gb|CI194773.1|CI194773
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86867697|gb|CI342672.1|CI342672
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: CCTACGACCTGTTGCATGGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|44670654|gb|CR284088.1|CR284088
genomic: CCTACGACCTGTTGCAT-GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|300215909|gb|HO088535.1|HO088535
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|3763523|gb|AU030275.1|AU030275
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTNTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86429687|gb|CI076368.1|CI076368
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88197450|gb|CI196757.1|CI196757
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACGTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87036370|gb|CI190992.1|CI190992
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: GCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|9865762|gb|AU101512.1|AU101512
genomic: GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|89181260|gb|CI112766.1|CI112766
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|89166580|gb|CI103866.1|CI103866
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88236106|gb|CI235308.1|CI235308
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTAGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|89166195|gb|CI103285.1|CI103285
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87037065|gb|CI191687.1|CI191687
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|29679561|gb|CB675836.1|CB675836
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87021158|gb|CI271965.1|CI271965
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86524495|gb|CI164701.1|CI164701
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88908184|gb|CI090779.1|CI090779
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|89193118|gb|CI050416.1|CI050416
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86822663|gb|CI358131.1|CI358131
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: TTGTTTAGCATCTATCAGGACAG GTTTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88961821|gb|CI096974.1|CI096974
genomic: TTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|3107726|gb|D43466.1|D43466
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAAEST: gi|117252136|gb|CT844318.1|CT844318
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88835791|gb|CI370896.1|CI370896
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: CATCTATCAGGACA- GTGTGACATAACCAACATCCTC-TGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87039609|gb|CI194231.1|CI194231
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|33798161|gb|CF324939.1|CF324939
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88253499|gb|CI352125.1|CI352125
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88235588|gb|CI234642.1|CI234642
genomic: ATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88846485|gb|CI373253.1|CI373253
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: AATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86498946|gb|CI141579.1|CI141579
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: TAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87016295|gb|CI271706.1|CI271706
genomic: TAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|86433537|gb|CI093880.1|CI093880
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACTTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|87029335|gb|CI250268.1|CI250268
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|11233307|gb|AU164726.1|AU164726
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: CATCTATCAGGACAG NTGTGACATAACCAACNTCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88234499|gb|CI234348.1|CI234348
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|88197397|gb|CI196704.1|CI196704
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GCGTGACATAACCAACATCCTTTTGGAGATGGACAGGATCCTGAGGCCCGAEST: gi|58602244|gb|CK012772.1|CK012772
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG GTGTGACATAACCAAC
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAAC
atcacattattggtttatagcctgcttactgatgcacatttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG
tactgat putative branch site (score: 2)
tttcttca putative PPT
attattggtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgtctgaattagtggggcaatctgaatgtgcaaaactgcaaatcacattattggtttatagcctgcttactgatgcacatttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG
- -atgtctg
- - - - - - - - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca