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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataatgtctgaattagtggggcaatctgaatgtgcaaaactgcaaatcacattattggtttatagcctgcttactgatgcacatttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG

Basic information

species Oryza sativa
transcript LOC_Os10g36690.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36690.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G114570_T01 (Zea mays), 3'ss of exon 5
ataatgtctgaatta-gtggggcaatctgaatgtgcaaaactgcaa-atcacatt---attggtttatagcctgcttac-----tgatgcac------atttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG
    |    ||| || |||   | ||||  || |  || ||| | | ||  ||     |||  |||| | | | |   |     ||| ||        ||  | | ||| || |||||| || |||||   ||||||||||||||||||||| ||  | |||||||||||||| || |||||||||||||| |||||||| ||||| |||||||||
---gtaagggaactatgtgcttcgatctttatcttaaatactactatatggcaagcaaatttttttacaacatacaggccatcatgacgcgttttgttatcccctaaactttccagGTGCGATATAACTGGCATCCTCTTGGAGATGGACAGAATATTAAGGCCCGAGGGCACAGCTATCATCCGCGACACAGTCGACGTGCTCACGAAGGTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88198355|gb|CI198205.1|CI198205
EST:     CTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88902474|gb|CI088012.1|CI088012
EST:     AATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87042149|gb|CI194773.1|CI194773
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86867697|gb|CI342672.1|CI342672
EST:     CCTACGACCTGTTGCATGGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CCTACGACCTGTTGCAT-GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|44670654|gb|CR284088.1|CR284088
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|300215909|gb|HO088535.1|HO088535
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|3763523|gb|AU030275.1|AU030275
EST:     ACCTACGACCTNTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86429687|gb|CI076368.1|CI076368
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88197450|gb|CI196757.1|CI196757
EST:     ACGTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87036370|gb|CI190992.1|CI190992
EST:     GCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|9865762|gb|AU101512.1|AU101512
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89181260|gb|CI112766.1|CI112766
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89166580|gb|CI103866.1|CI103866
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88236106|gb|CI235308.1|CI235308
EST:     ACCTACGACCTGTAGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89166195|gb|CI103285.1|CI103285
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87037065|gb|CI191687.1|CI191687
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|29679561|gb|CB675836.1|CB675836
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87021158|gb|CI271965.1|CI271965
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86524495|gb|CI164701.1|CI164701
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88908184|gb|CI090779.1|CI090779
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89193118|gb|CI050416.1|CI050416
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86822663|gb|CI358131.1|CI358131
EST:     TTGTTTAGCATCTATCAGGACAG                         GTTTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: TTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88961821|gb|CI096974.1|CI096974
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|3107726|gb|D43466.1|D43466
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAA
EST: gi|117252136|gb|CT844318.1|CT844318
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88835791|gb|CI370896.1|CI370896
EST:     CATCTATCAGGACA-                         GTGTGACATAACCAACATCCTC-TGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87039609|gb|CI194231.1|CI194231
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|33798161|gb|CF324939.1|CF324939
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88253499|gb|CI352125.1|CI352125
EST:     ATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88235588|gb|CI234642.1|CI234642
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88846485|gb|CI373253.1|CI373253
EST:     AATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86498946|gb|CI141579.1|CI141579
EST:     TAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: TAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87016295|gb|CI271706.1|CI271706
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86433537|gb|CI093880.1|CI093880
EST:     ACTTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87029335|gb|CI250268.1|CI250268
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|11233307|gb|AU164726.1|AU164726
EST:     CATCTATCAGGACAG                         NTGTGACATAACCAACNTCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88234499|gb|CI234348.1|CI234348
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88197397|gb|CI196704.1|CI196704
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GCGTGACATAACCAACATCCTTTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|58602244|gb|CK012772.1|CK012772
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAAC
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacattattggtttatagcctgcttactgatgcacatttcttcaacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGAGGGCACGGCGATCATCCGCGACACGGTCGACGTCCTCACCAAGGTCCAG
                          tactgat  putative branch site (score: 2)
                                      tttcttca  putative PPT
     attattggtttata  TA-rich tract