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gtaagagccaagaacataaaaaaatcaatattttgaaaaataaactttgcaaatagattacaataggtggtttaaccaatgcagtagaaatagaagatggagcaaataatctgtggcaaaatatcaatctgtttgttgctccaatctccattttttgttttttttaactgattcttgcgtgcaaatttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGG
species | Oryza sativa |
transcript | LOC_Os10g35070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGG ATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAEST: gi|58588710|gb|CF987018.1|CF987018
genomic: GATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGgtaagagcca ... atttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCA
EST: GATTATGTTCACAGCAGGGGGCTCAAGCTAGGCATTTACTCCGATGCAGG ATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAEST: gi|218491995|gb|FG964383.1|FG964383
genomic: GATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGgtaagagcca ... atttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCA
EST: CTCCGATGCAGG ATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAEST: gi|112785532|gb|EE590887.1|EE590887
genomic: CTCCGATGCAGGgtaagagcca ... atttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCA
EST: GATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGG ATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCA
genomic: GATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGgtaagagcca ... atttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCA
tccaatctccattttttgttttttttaactgattcttgcgtgcaaatttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGG
tttct CT-rich tract
attttttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagccaagaacataaaaaaatcaatattttgaaaaataaactttgcaaatagattacaataggtggtttaaccaatgcagtagaaatagaagatggagcaaataatctgtggcaaaatatcaatctgtttgttgctccaatctccattttttgttttttttaactgattcttgcgtgcaaatttctgaagATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG