1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taatctaataacctgtgcaaagttatcagaactgctaagcaaactacttgcatattgttgttcttctcatcttttgacaaaatggtattcttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACGTTGAGAGAGAAACTAGGCATGGATAGTATAAACATATCTAGCAGTTCAT
species | Oryza sativa |
transcript | LOC_Os10g34400.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAG GCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACGEST: gi|29628475|gb|CB633486.1|CB633486
genomic: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAGgtgcgctaaa ... ttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACG
EST: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAG GCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCACATACGEST: gi|56157749|gb|C26223.2|C26223
genomic: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAGgtgcgctaaa ... ttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACG
EST: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAG GCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACG
genomic: CCATATTTGAAATTTACTTTGCTGAGGCCAATGGAGGGTACAATCTGCAGgtgcgctaaa ... ttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACG
acttgcatattgttgttcttctcatcttttgacaaaatggtattcttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACGTTGAGAGAGAAACTAGGCATGGATAGTATAAACATATCTAGCAGTTCAT
ttttgac putative branch site (score: 20)
ttcttgttt putative PPT
atattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctaataacctgtgcaaagttatcagaactgctaagcaaactacttgcatattgttgttcttctcatcttttgacaaaatggtattcttgtttacagGCAGTGCATCTGAAACCAGATGACAGTGATTCTCAGCAGTTGTCAAATACGTTGAGAGAGAAACTAGGCATGGATAGTATAAACATATCTAGCAGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - -cctgtgc
- - - - - - - - - - - - - - -aactgct
- - - - - - - - - - - - - - - - - - -agcaaac
- - - - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa