1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgttctttctttatcatggttaataaacagggctaacagcaagccacaaaatattttaggtcaaagcaaaataaccaagatttttttttttggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAACAACTCCACCTCCCCGTCTTGCTGATTTGTATGTCACTGCTGACACATT
species | Oryza sativa |
transcript | LOC_Os10g33720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAAEST: gi|33794436|gb|CF323102.1|CF323102
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
EST: TCAGTATGGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACEST: gi|33796795|gb|CF324264.1|CF324264
genomic: TCAGTATGGGG-AGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAAC
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAAEST: gi|33677634|gb|CF305873.1|CF305873
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAAT-TACTATGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAAEST: gi|38481183|gb|CF965272.1|CF965272
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAAEST: gi|88302488|gb|CI668334.1|CI668334
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAAEST: gi|58673420|gb|CK062106.1|CK062106
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
EST: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAAC AAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
genomic: CTCAGTATGGGGAGTGCAAATGGAAGCTTGCATTACGCCATATCCAGAACgtaagttatt ... tggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAA
acaaaatattttaggtcaaagcaaaataaccaagatttttttttttggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAACAACTCCACCTCCCCGTCTTGCTGATTTGTATGTCACTGCTGACACATT
aaataac putative branch site (score: 15)
tttttttttttggttc putative PPT
aaaataaccaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctttctttatcatggttaataaacagggctaacagcaagccacaaaatattttaggtcaaagcaaaataaccaagatttttttttttggttctcagAAATGCACAAAGATGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAACAACTCCACCTCCCCGTCTTGCTGATTTGTATGTCACTGCTGACACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT