1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaaacttgtggtctagcttttctttatcagctcgtttgcatgcgaagagtggctaatggctttgtgttctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTGTGACTAATCCCAAG
species | Oryza sativa |
transcript | LOC_Os10g31900.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTEST: gi|58678587|gb|CK067274.1|CK067274
genomic: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaactt ... ctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
EST: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTEST: gi|218490390|gb|FG958429.1|FG958429
genomic: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaactt ... ctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
EST: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTEST: gi|218480525|gb|FG956905.1|FG956905
genomic: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaactt ... ctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
EST: AGAAGAGCC-TGATGTA-GGGCAAATCTTTTTATTGGCAATCTCGATCCG GATGTTGAC-AAAAGATCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTEST: gi|218497396|gb|FG967338.1|FG967338
genomic: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaactt ... ctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
EST: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
genomic: AGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaactt ... ctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATT
ttatcagctcgtttgcatgcgaagagtggctaatggctttgtgttctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTGTGACTAATCCCAAG
ggctaat putative branch site (score: 13)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaacttgtggtctagcttttctttatcagctcgtttgcatgcgaagagtggctaatggctttgtgttctgtgttcagGATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTGTGACTAATCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG