1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggtttttttcctatgaacaaaagtctatgatgattcccaccccttttttttgtatgtggaaaatgcaacttcttcacaatttgccttttacattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAG
species | Oryza sativa |
transcript | LOC_Os10g30520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAG GAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATEST: gi|88844315|gb|CI005688.1|CI005688
genomic: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAGgtataacatt ... acattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
EST: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAG GAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATEST: gi|1854281|gb|AA231895.1|AA231895
genomic: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAGgtataacatt ... acattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
EST: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAG GAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATEST: gi|88846352|gb|CI373120.1|CI373120
genomic: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAGgtataacatt ... acattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
EST: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAG GAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATEST: gi|88274933|gb|CI388391.1|CI388391
genomic: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAGgtataacatt ... acattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
EST: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAG GAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
genomic: ATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGTGAAGgtataacatt ... acattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAAT
tttttttgtatgtggaaaatgcaacttcttcacaatttgccttttacattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAG
ccttttacattttc CT-rich tract
ttttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtttttttcctatgaacaaaagtctatgatgattcccaccccttttttttgtatgtggaaaatgcaacttcttcacaatttgccttttacattttcagGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - -gaacaaa
- - - - - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt