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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgcaatatttcttcttgttgcgcattgcagagacccatgagcttatttctggtatatgacatgaattctttgccctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATT

Basic information

species Oryza sativa
transcript LOC_Os10g29660.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10931093|gb|AU161367.1|AU161367
EST:     GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTG                         AGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
genomic: GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGgtaagtctgc ... ctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
EST: gi|58677654|gb|CK066341.1|CK066341
EST:     GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTG                         AGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
genomic: GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGgtaagtctgc ... ctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
EST: gi|86510242|gb|CI152875.1|CI152875
EST:     GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTG                         AGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
genomic: GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGgtaagtctgc ... ctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
EST: gi|8324452|gb|AU091604.1|AU091604
EST:     GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTG                         AGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA
genomic: GAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGgtaagtctgc ... ctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagacccatgagcttatttctggtatatgacatgaattctttgccctgactacagAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATT
                                           ccctgac  putative branch site (score: 3)
                                    ttctttgccct  CT-rich tract
             ttatttct  TA-rich tract