1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcaagttctctatttaacattataattcaatagtagaatcatgtacactgtaatttggcataactgttgtattaaactctttgatatgcatttttacagTGCTGTGCCATCTGCGGTGTTTTCCCAACCTCCAATTGGACAAGTTGGACTCACTGAAGAGAAG
species | Oryza sativa |
transcript | LOC_Os10g28000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTAGCAAGGACTATTTTTTGGCAATGAACCTACAAAACCAGATTACAG TGCTGTTCCATCTGCGGTGTTTT
genomic: CATTAGCAAGGACTATTTTT-GGCAATGAACCTACAAAACCAGATTACAGgtatgcatgt ... atttttacagTGCTGTGCCATCTGCGGTGTTTT
acactgtaatttggcataactgttgtattaaactctttgatatgcatttttacagTGCTGTGCCATCTGCGGTGTTTTCCCAACCTCCAATTGGACAAGTTGGACTCACTGAAGAGAAG
cattttt CT-rich tract
ttgtattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagttctctatttaacattataattcaatagtagaatcatgtacactgtaatttggcataactgttgtattaaactctttgatatgcatttttacagTGCTGTGCCATCTGCGGTGTTTTCCCAACCTCCAATTGGACAAGTTGGACTCACTGAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt