1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcttgcactctttcagaactacaatactgctgtttatgcagccttttggcatatccaagtgacaaatgcaaggctgacataaaaatggtgcttattttagGTTCCTCCTACCAGCTTCTTTGATCGCTATCAACGATGTTGCTGCATATTTCTTCGGCTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAA
species | Oryza sativa |
transcript | LOC_Os10g17990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ttggcatatccaagtgacaaatgcaaggctgacataaaaatggtgcttattttagGTTCCTCCTACCAGCTTCTTTGATCGCTATCAACGATGTTGCTGCATATTTCTTCGGCTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAA
ggctgac putative branch site (score: 6)
cttatttt putative PPT
acataaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgcactctttcagaactacaatactgctgtttatgcagccttttggcatatccaagtgacaaatgcaaggctgacataaaaatggtgcttattttagGTTCCTCCTACCAGCTTCTTTGATCGCTATCAACGATGTTGCTGCATATTTCTTCGGCTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAA
gcttgca
- - - - - - - - aactaca
- - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - tatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatgg