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gtattgactgccattttgctttctgcaccatatcatcttttaatgatttatttgtcattgttgaggttaattaccatcaatttgaaattcttatttttgctcaccttagtggaaatacgtcatgtaatgatttttttttattctaagcatactcctgaatcatgattgcatctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTTTGACTAGTGCAGTTGGAGCAACCTTTACATATGAGATTTTGAT
species | Oryza sativa |
transcript | LOC_Os09g39380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAEST: gi|33381850|gb|CF197193.1|CF197193
genomic: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
EST: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAEST: gi|58680354|gb|CK069041.1|CK069041
genomic: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
EST: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAEST: gi|33802788|gb|CF327265.1|CF327265
genomic: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
EST: TGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAEST: gi|11565247|gb|AU165883.1|AU165883
genomic: TGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
EST: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAEST: gi|58686216|gb|CK074903.1|CK074903
genomic: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
EST: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAG GCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
genomic: TGTCGGCAGTGGAGGAGAGAGGCTTTTGCCCGAATGGTACTCAGAGAAAGgtattgactg ... ctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCA
atgatttttttttattctaagcatactcctgaatcatgattgcatctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTTTGACTAGTGCAGTTGGAGCAACCTTTACATATGAGATTTTGAT
ttttttttattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgactgccattttgctttctgcaccatatcatcttttaatgatttatttgtcattgttgaggttaattaccatcaatttgaaattcttatttttgctcaccttagtggaaatacgtcatgtaatgatttttttttattctaagcatactcctgaatcatgattgcatctgttggcagGCATTGAGTTGATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTTTGACTAGTGCAGTTGGAGCAACCTTTACATATGAGATTTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA