Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG

Basic information

species Oryza sativa
transcript LOC_Os09g37910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G162284_T03 (Zea mays), 3'ss of exon 4
----gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
    | ||||||     ||    ||    | || |||| | |   || |  ||          | |||     |  ||    ||| |  |||        |||||| |||||||| | |||  | ||||| |||||||| |||| ||||||||| |||||||| |||||||| ||||||||||||
aagggttttgttcaacttgcatattcacttcaacgctccgatgcagtatacgtttgttc----ccttgcccgccctttgacgttgtgcagtttctgaatcgcagGAGAAGGCTCCCTACGTATCTAAGGCCGAGAAGCTGAAGGTTGAGTACACAAAGAAGATGGACGCCTATAACAACAAGCAG

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G066528_T02 (Zea mays), 3'ss of exon 5
-gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttac-atttgaggtgttgaaac------gatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
 | |||     |||||  ||||||| ||  |||    ||  || || |  | |    ||  | || |      | ||  ||||| ||  ||  ||       |||||||| |||||||| | |||| | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
tgcttttaacgctctgatgtttgtt-tgtgtgc---atttatgattgaaacta----gtaatgtgatggaacatcaccgtttgacgtagtgcgactcttcaaatgcagGAGAAGGCTCCCTACGTGTCTAAGGCAGAGAAGCTCAAGGCTGAGTACACCAAGAAGATCGACGCTTACAACAACAAGCAG

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G066528_T01 (Zea mays), 3'ss of exon 5
-gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttac-atttgaggtgttgaaac------gatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG-----
 | |||     |||||  ||||||| ||  |||    ||  || || |  | |    ||  | || |      | ||  ||||| ||  ||  ||       |||||||| |||||||| | |||| | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||     
tgcttttaacgctctgatgtttgtt-tgtgtgc---atttatgattgaaacta----gtaatgtgatggaacatcaccgtttgacgtagtgcgactcttcaaatgcagGAGAAGGCTCCCTACGTGTCTAAGGCAGAGAAGCTCAAGGCTGAGTACACCAAGAAGATCGACGCTTACAACAACAAGCAGGTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88903838|gb|CI711540.1|CI711540
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGC
EST: gi|701299|gb|D47590.1|D47590
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTTGAGAAGCTCAAGGCTGAGTACAC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCT-GAGAAGCTCAAGGCTGAGTACAC
EST: gi|55414429|gb|CV726805.1|CV726805
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33663560|gb|CF294527.1|CF294527
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86829841|gb|CI288535.1|CI288535
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|55435413|gb|CV730838.1|CV730838
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86829652|gb|CI286813.1|CI286813
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33664035|gb|CF295002.1|CF295002
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|572169|gb|D41680.1|D41680
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGGAAGTTCAAGGCTGAGTACAC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAG-AAGCTCAAGGCTGAGTACAC
EST: gi|88666280|gb|CI716436.1|CI716436
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTC
EST: gi|701542|gb|D47833.1|D47833
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACANC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33691038|gb|CF319277.1|CF319277
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33655319|gb|CF277933.1|CF277933
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|15008575|gb|AU222963.1|AU222963
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88336088|gb|CI647282.1|CI647282
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|55438827|gb|CV732712.1|CV732712
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88595104|gb|CI715260.1|CI715260
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGAC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGAC
EST: gi|88666063|gb|CI716219.1|CI716219
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88720160|gb|CI745250.1|CI745250
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAA
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAA
EST: gi|88352919|gb|CI678953.1|CI678953
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGA
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGA
EST: gi|88341443|gb|CI635641.1|CI635641
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88409966|gb|CI571223.1|CI571223
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88904434|gb|CI711742.1|CI711742
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|163926292|gb|EG712876.1|EG712876
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAG
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAG
EST: gi|88576662|gb|CI670807.1|CI670807
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGACAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33683487|gb|CF311726.1|CF311726
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|24208407|gb|AU225434.1|AU225434
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|4878390|gb|AU062689.1|AU062689
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGTTGAGTACA
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACA
EST: gi|88571600|gb|CI662973.1|CI662973
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|569750|gb|D40599.1|D40599
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGNTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33659238|gb|CF281851.1|CF281851
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|11863289|gb|AU065278.2|AU065278
EST:     ATTNGCAAGGCTGGTGGTGACAAGTGGTAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGT
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGT
EST: gi|33665399|gb|CF296366.1|CF296366
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGACTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACA
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACA
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|55437048|gb|CV731721.1|CV731721
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88955287|gb|CI721859.1|CI721859
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTA
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTA
EST: gi|33662889|gb|CF293856.1|CF293856
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
                        ctcttac  putative branch site (score: 3)
               tttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG