1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacaagcttgacataaaacttaccaactatgtatttcaggcaagaaaatttattatttccaaaactaactttatatacctaaatcattttcagGAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAA
species | Oryza sativa |
transcript | LOC_Os09g32948.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGG GAACANAATGTTGTGTGAAGCAAATAAEST: gi|66947382|gb|AU312226.1|AU312226
genomic: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGGgtacaagctt ... tcattttcagGAACA-AATGTTGTGTGAAGCAAATAA
EST: CTTGATCAGCTCACTGATTCT-CAGAAGGAGG GAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAAEST: gi|66915572|gb|CX102420.1|CX102420
genomic: CTTGATCAGCTCACTGA-TCTCCAG-AGGAGGgtacaagctt ... tcattttcagGAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAA
EST: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGG GAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAAEST: gi|55408198|gb|CV720574.1|CV720574
genomic: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGGgtacaagctt ... tcattttcagGAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAA
EST: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGG GAACAAATGTTGTGTGAAGCAAATAA
genomic: ACACAGCATATGCTTGATCAGCTCACTGATCTCCAGAGGAGGgtacaagctt ... tcattttcagGAACAAATGTTGTGTGAAGCAAATAA
ggcaagaaaatttattatttccaaaactaactttatatacctaaatcattttcagGAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAA
tcattttc CT-rich tract
aaaatttattatttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagcttgacataaaacttaccaactatgtatttcaggcaagaaaatttattatttccaaaactaactttatatacctaaatcattttcagGAACAAATGTTGTGTGAAGCAAATAAGTGCCTCAGAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA