1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACT
species | Oryza sativa |
transcript | LOC_Os09g32800.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33804936|gb|CF328345.1|CF328345
genomic: GACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGEST: gi|88532692|gb|CI462194.1|CI462194
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: CACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|55436537|gb|CV731403.1|CV731403
genomic: CACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86534653|gb|CI174859.1|CI174859
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88586971|gb|CI704694.1|CI704694
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33818149|gb|CF334903.1|CF334903
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|218499612|gb|FG949767.1|FG949767
genomic: TAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88250654|gb|CI348884.1|CI348884
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88253970|gb|CI352596.1|CI352596
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86527433|gb|CI167639.1|CI167639
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|89165488|gb|CI102578.1|CI102578
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88583462|gb|CI700944.1|CI700944
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88216666|gb|CI214766.1|CI214766
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|15855480|gb|BI808292.1|BI808292
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGA-GCGGTCGATTTAGTGAAGGATEST: gi|86593168|gb|CI255630.1|CI255630
genomic: TACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|87032229|gb|CI262011.1|CI262011
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33806416|gb|CF329086.1|CF329086
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCACACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|38472549|gb|CF956681.1|CF956681
genomic: GCTGGACAACCA-ACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88270878|gb|CI380178.1|CI380178
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: CCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33660627|gb|CF291594.1|CF291594
genomic: CCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGEST: gi|88956647|gb|CI092839.1|CI092839
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCG
EST: TGCTGGACAACCAACTAAAATTACCTAGTCCACTATTACTCCCCGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|58608080|gb|CK036113.1|CK036113
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86545869|gb|CI186075.1|CI186075
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88535226|gb|CI464012.1|CI464012
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33683337|gb|CF311576.1|CF311576
genomic: TCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGEST: gi|86527635|gb|CI167841.1|CI167841
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88200971|gb|CI201326.1|CI201326
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88836780|gb|CI014781.1|CI014781
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86511751|gb|CI154384.1|CI154384
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCAGTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88386674|gb|CI682818.1|CI682818
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86413520|gb|CI019105.1|CI019105
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|3763562|gb|AU030314.1|AU030314
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCNCCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88550971|gb|CI480460.1|CI480460
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88554285|gb|CI484454.1|CI484454
genomic: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGGACAACCAGCTGAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTNTCGGAGACAGAGGCGGTCGATTTANTGAAGGATEST: gi|55434860|gb|CV730555.1|CV730555
genomic: TGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86823995|gb|CI260689.1|CI260689
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33818729|gb|CF335188.1|CF335188
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCACACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88405112|gb|CI685561.1|CI685561
genomic: GCTGGACAACCA-ACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|44669011|gb|CR282445.1|CR282445
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: CTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33683336|gb|CF311575.1|CF311575
genomic: CTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCAACTANAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86524528|gb|CI164734.1|CI164734
genomic: GCTGGACAACCAACTA-AAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|89162793|gb|CI099683.1|CI099683
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33660628|gb|CF291595.1|CF291595
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88830065|gb|CI074737.1|CI074737
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86592540|gb|CI253221.1|CI253221
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86258837|gb|CI000066.1|CI000066
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88428151|gb|CI557045.1|CI557045
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88533469|gb|CI461031.1|CI461031
genomic: TCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|89187440|gb|CI264259.1|CI264259
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88958729|gb|CI381532.1|CI381532
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: CAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33803802|gb|CF327775.1|CF327775
genomic: CAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88907381|gb|CI090175.1|CI090175
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88211460|gb|CI211100.1|CI211100
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|218497460|gb|FG955186.1|FG955186
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCAATATTACTCCCTGCAAGA GATGCCGTGAAACCTTTGTCGGAGACAGAGGCGGTCGATATAGTGAAGGATEST: gi|87035386|gb|CI190008.1|CI190008
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88829933|gb|CI004971.1|CI004971
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33823301|gb|CF337451.1|CF337451
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGEST: gi|33803800|gb|CF327774.1|CF327774
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGEST: gi|86593079|gb|CI255541.1|CI255541
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAG
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|396941603|gb|HO188260.1|HO188260
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86522336|gb|CI162542.1|CI162542
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88238498|gb|CI238347.1|CI238347
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88391989|gb|CI683811.1|CI683811
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86503207|gb|CI145840.1|CI145840
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGCCGGTCGATTTAGTGAAGGATEST: gi|55439809|gb|CV733215.1|CV733215
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|89199025|gb|CI253099.1|CI253099
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|89166087|gb|CI103177.1|CI103177
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: CGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86253685|gb|CI058412.1|CI058412
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|87013582|gb|CI267283.1|CI267283
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88413219|gb|CI523780.1|CI523780
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|87034062|gb|CI187424.1|CI187424
genomic: TAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88257652|gb|CI360238.1|CI360238
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGGTGGACAACCAACTAAAATCACCTAGTCCAGTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAEST: gi|88215696|gb|CI215545.1|CI215545
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTT-GTCGGAGACAGAGGCGGTCGATTTAGTGAAGGA
EST: AAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33818106|gb|CF334879.1|CF334879
genomic: AAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88839225|gb|CI000697.1|CI000697
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|87035374|gb|CI189996.1|CI189996
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33804938|gb|CF328346.1|CF328346
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86502309|gb|CI144942.1|CI144942
genomic: GCTGGACAA-CCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|88450183|gb|CI541944.1|CI541944
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86527148|gb|CI167354.1|CI167354
genomic: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|86253702|gb|CI058429.1|CI058429
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33683522|gb|CF311761.1|CF311761
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATEST: gi|33818151|gb|CF334904.1|CF334904
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGEST: gi|88728176|gb|CI751686.1|CI751686
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
caactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACT
ttctgat putative branch site (score: 95)
taagaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG