1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...accacgtttgtagttaatgtgccacgtgcttttagttatgatttacatgtttgcagttcactgtcgcactatttgattttctgttgtgctgctgttacagCTATCCAATGCTGGAGGCAGGATTATCATTGCAAGTGATGGTGTATGGGATGATTTGACTTTTGAAATGGCACTTGAGTGTTCTCGTGGATTCCCATCAG
species | Oryza sativa |
transcript | LOC_Os09g28560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
catgtttgcagttcactgtcgcactatttgattttctgttgtgctgctgttacagCTATCCAATGCTGGAGGCAGGATTATCATTGCAAGTGATGGTGTATGGGATGATTTGACTTTTGAAATGGCACTTGAGTGTTCTCGTGGATTCCCATCAG
atttgat putative branch site (score: 2)
tatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacgtttgtagttaatgtgccacgtgcttttagttatgatttacatgtttgcagttcactgtcgcactatttgattttctgttgtgctgctgttacagCTATCCAATGCTGGAGGCAGGATTATCATTGCAAGTGATGGTGTATGGGATGATTTGACTTTTGAAATGGCACTTGAGTGTTCTCGTGGATTCCCATCAG
- - - - - - - -aatgtgc
- - - - - - - - - - - cacgtgc
- - - - - - - - - - - - - - - - - -ttatgat
- - - - - - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcactg