1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcataaacaattgttttattcaatttgctcctgccacagtttgtttttcattgctatactcagctactaatttcatctcctctgcattttttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTTTTGATCAGTTGCTCACCATCCCTGAGCAAGATGAATGGGTTTACAGTG
species | Oryza sativa |
transcript | LOC_Os09g22440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|29683636|gb|CB679911.1|CB679911
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|29616538|gb|CB621550.1|CB621550
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|300216292|gb|HO088077.1|HO088077
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAAACGTGGGATGTCTEST: gi|58587758|gb|CF986066.1|CF986066
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|58593324|gb|CF991632.1|CF991632
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGACACTGACAGACGTGGGATGTCEST: gi|218498562|gb|FG955783.1|FG955783
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTC
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|25806597|gb|CA762558.1|CA762558
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|29683637|gb|CB679912.1|CB679912
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: GCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTEST: gi|7134677|gb|AU082617.1|AU082617
genomic: GCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAG GGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTTAACAAACGACTTGGGACTGAGgtctgtgaac ... ttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCT
tttcattgctatactcagctactaatttcatctcctctgcattttttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTTTTGATCAGTTGCTCACCATCCCTGAGCAAGATGAATGGGTTTACAGTG
tactaat putative branch site (score: 42)
tttcatctcctctgca CT-rich tract
tgcattttttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataaacaattgttttattcaatttgctcctgccacagtttgtttttcattgctatactcagctactaatttcatctcctctgcattttttttatatagGGGTTGGACCTTCATGGGATCATTGTTGAAACTGAAAGACGTGGGATGTCTTTTGATCAGTTGCTCACCATCCCTGAGCAAGATGAATGGGTTTACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- ataaaca
- - - - - - - - - - - - - - tcctgcc
- - - - - - - - - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagctac