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...tttagatagatataactgatcccatatgtaggacttgctagttgattgtattgtttaccaaaaatccaaaatccataattgatttgaaactgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCATTCGGCCACAGCTGTTGGAGCTGAGCTGACCCACAGCTTCTCGAGCAAC
species | Oryza sativa |
transcript | LOC_Os09g19734.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|29634623|gb|CB639632.1|CB639632
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|84117435|gb|CD151202.1|CD151202
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCATCATTGAACCT GAACAACAAGGGAGACAGTCTCACTGCATCTTATTACCACATTEST: gi|33827852|gb|CF339741.1|CF339741
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATT
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|427625|gb|D23758.1|D23758
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: GCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|58587649|gb|CF985957.1|CF985957
genomic: GCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCATCATTGAGCCT GAACAACAAGGGAGACAGTCTCACTGCATCTTATTACCACATTGTGAACCEST: gi|33802112|gb|CF326928.1|CF326928
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACC
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|163920092|gb|EG709862.1|EG709862
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|33827932|gb|CF339781.1|CF339781
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GA-CAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|163927455|gb|EG709935.1|EG709935
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|33794658|gb|CF323216.1|CF323216
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAA-AACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCAEST: gi|33825589|gb|CF338605.1|CF338605
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
EST: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCT GAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
genomic: AATGCTGGATTGAGCTTCAGTAATGATGATCTTATCGCGTCATTGAACCTgtaagtgtct ... tgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCA
ttgtattgtttaccaaaaatccaaaatccataattgatttgaaactgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCATTCGGCCACAGCTGTTGGAGCTGAGCTGACCCACAGCTTCTCGAGCAAC
aattgat putative branch site (score: 142)
ctgtctt putative PPT
ataattgatttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagatagatataactgatcccatatgtaggacttgctagttgattgtattgtttaccaaaaatccaaaatccataattgatttgaaactgtcttgcagGAACAACAAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCATTCGGCCACAGCTGTTGGAGCTGAGCTGACCCACAGCTTCTCGAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA