1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatgttcatcattttcttttttcatgtcaactcctgttctgtattctgaatcggtcctctggtgtagGTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
species | Oryza sativa |
transcript | LOC_Os09g10600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTACCCATTGGATGCAGTTTTTGACTCTCCTGAGGATGTTCCTGATGAT GTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAGEST: gi|29640101|gb|CB645110.1|CB645110
genomic: TCTACCCATTGGATGCAGTTTTTGACTCTCCTGAGGATGTTCCTGATGATgtaatgttca ... tctggtgtagGTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
EST: TCTACCCATTGGATGCAGTTTTTGACTCTCCTGAGGATGTTCCTGATGAT GTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
genomic: TCTACCCATTGGATGCAGTTTTTGACTCTCCTGAGGATGTTCCTGATGATgtaatgttca ... tctggtgtagGTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
tttcttttttcatgtcaactcctgttctgtattctgaatcggtcctctggtgtagGTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
tcctct CT-rich tract
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttcatcattttcttttttcatgtcaactcctgttctgtattctgaatcggtcctctggtgtagGTTAAAGCAAACAAAAGGTATGCTGGATCTTCAAACTGGACTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA