1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cccttttcaatgtgcacaagctgctttatctgaagtattgtgtaattcatgctttagtgcttaccattggaatgggctgattgatgggttgtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAG
species | Oryza sativa |
transcript | LOC_Os08g45240.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGEST: gi|44677542|gb|CR290976.1|CR290976
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGG
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAG
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttttcaatgtgcacaagctgctttatctgaagtattgtgtaattcatgctttagtgcttaccattggaatgggctgattgatgggttgtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG