Skip to another splice site:
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 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtaaaaaagatcatacttttaccactaggagagttgctgcattgctgttttaagttacgaaactcagcttacctacttttgatggtttcttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG

Basic information

species Oryza sativa
transcript LOC_Os08g44770.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44770.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G106928_T02 (Zea mays), 3'ss of exon 5
gtagagtaaaaaagatcatacttttaccactaggagagttgctgcattgctgttttaagttacgaaactcagcttacctacttttgatggtttcttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG
||| | ||  ||| ||||||||||||  ||||       |  | ||| ||   || |  ||   ||  |            || ||||   ||  | | |  |||||||| ||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
gtaaattatgaaatatcatacttttat-actata-----tagtccatggccaattcagcttggtaattt------------ttgtgattccttggtatgatcagATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG

upper sequence: LOC_Os08g44770.2 (Oryza sativa), 3'ss of exon 5
lower sequence: AT2G28190.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagagtaaaaaagatcatac-ttttaccactaggagagttgctgcattgc-tgttttaagttacgaaactcagcttacctacttttgatggtttcttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG
     ||       |||  |  |||| ||  || ||    |  ||| |  | | ||||   |||  | |   |||||   |  ||    ||   |    |   ||||||||||||| ||| || |||||||||||||| ||||| || || ||||| |||||| | |||||  | || ||||
-----gttggtgctatcgcatgtttttcctataagaagtatattgcttctcatattttctcttataaga---agctt--ttgtttactgtgaacttgattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86506140|gb|CI148773.1|CI148773
EST:     GGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86513004|gb|CI155637.1|CI155637
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCTCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86508198|gb|CI150831.1|CI150831
EST:     AGGTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: AGGTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86421225|gb|CI057214.1|CI057214
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88839545|gb|CI005333.1|CI005333
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86889161|gb|CI315772.1|CI315772
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86834311|gb|CI344071.1|CI344071
EST:     TTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCGT
genomic: TTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86528723|gb|CI168929.1|CI168929
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|87015771|gb|CI277729.1|CI277729
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88985036|gb|CI011891.1|CI011891
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88845738|gb|CI008735.1|CI008735
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89161504|gb|CI099476.1|CI099476
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|87011952|gb|CI283839.1|CI283839
EST:     GCTGAAGGTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GCTGAAGGTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88208570|gb|CI208419.1|CI208419
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88980612|gb|CI026674.1|CI026674
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88996089|gb|CI037380.1|CI037380
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|218498098|gb|FG967282.1|FG967282
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89163341|gb|CI100231.1|CI100231
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86529872|gb|CI170078.1|CI170078
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88216068|gb|CI215917.1|CI215917
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86510525|gb|CI153158.1|CI153158
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86544571|gb|CI184777.1|CI184777
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86511754|gb|CI154387.1|CI154387
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88975422|gb|CI023673.1|CI023673
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88223278|gb|CI223127.1|CI223127
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88983420|gb|CI028656.1|CI028656
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89197874|gb|CI013864.1|CI013864
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86425026|gb|CI070123.1|CI070123
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88204781|gb|CI204630.1|CI204630
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88975345|gb|CI023596.1|CI023596
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86479222|gb|CI121855.1|CI121855
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         GTTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86593056|gb|CI255518.1|CI255518
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88221590|gb|CI221546.1|CI221546
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|33805978|gb|CF328868.1|CF328868
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86528780|gb|CI168986.1|CI168986
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTATTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89163339|gb|CI100229.1|CI100229
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86420964|gb|CI056953.1|CI056953
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86528134|gb|CI168340.1|CI168340
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|94362563|gb|CI052682.1|CI052682
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88202104|gb|CI202459.1|CI202459
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|40486867|gb|BX898179.1|BX898179
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGATTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88904537|gb|CI012911.1|CI012911
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88977576|gb|CI025312.1|CI025312
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88987807|gb|CI017896.1|CI017896
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86527878|gb|CI168084.1|CI168084
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCGAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88835465|gb|CI005155.1|CI005155
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86418762|gb|CI053563.1|CI053563
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86508677|gb|CI151310.1|CI151310
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86526897|gb|CI167103.1|CI167103
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89170154|gb|CI039431.1|CI039431
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88975959|gb|CI024210.1|CI024210
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCCAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89169247|gb|CI038754.1|CI038754
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89178504|gb|CI015209.1|CI015209
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88991730|gb|CI034868.1|CI034868
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCCAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88217696|gb|CI217545.1|CI217545
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86416925|gb|CI030936.1|CI030936
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88835396|gb|CI005086.1|CI005086
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89187924|gb|CI009908.1|CI009908
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86512030|gb|CI154663.1|CI154663
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|38475413|gb|CF959546.1|CF959546
EST:     GTGTAGCTGGGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|89187021|gb|CI053424.1|CI053424
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|33805976|gb|CF328867.1|CF328867
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88256889|gb|CI354670.1|CI354670
EST:     CTGAAGGTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: CTGAAGGTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|87033246|gb|CI187870.1|CI187870
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88975836|gb|CI024087.1|CI024087
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|88214858|gb|CI212896.1|CI212896
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86261178|gb|CI004743.1|CI004743
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
EST: gi|86533041|gb|CI173247.1|CI173247
EST:     GTGTAGCTGAGGCAACCATTGTTGATAAGCAG                         ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT
genomic: GTGTAGCTGAGGCAACCATTGTTGATAAGCAGgtagagtaaa ... ttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttaagttacgaaactcagcttacctacttttgatggtttcttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG
                                         tttcttct  CT-rich tract
                                             ttctaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagagtaaaaaagatcatacttttaccactaggagagttgctgcattgctgttttaagttacgaaactcagcttacctacttttgatggtttcttctaaatagATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG