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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgggactgaacttgttggaaataagagaggcattggccttcaattttctttaattgcttaatctggtttgctacagCTCAAAGGCAGATTGGAGAAACTGCTTTGAATGAAACGAGTTCAAGGTCCCATCAAATACTCAGATTG

Basic information

species Oryza sativa
transcript LOC_Os08g43400.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88367346|gb|CI566312.1|CI566312
EST:     AACCTTGAGGGACAAGGATCATCTTAGGAACCTTCTTGCTGTGTGTGAAG                         CCTCAAAGGCAGATTGGAGAAACTGCTTTGAATGAAACGAGTTCAAGGTCC
genomic: AACCTTGAGGGACAAGGATCATCTTAGGAACCTTCTTGCTGTGTGTGAAGgtgtgggact ... tttgctacagC-TCAAAGGCAGATTGGAGAAACTGCTTTGAATGAAACGAGTTCAAGGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagagaggcattggccttcaattttctttaattgcttaatctggtttgctacagCTCAAAGGCAGATTGGAGAAACTGCTTTGAATGAAACGAGTTCAAGGTCCCATCAAATACTCAGATTG
                                  gcttaat  putative branch site (score: 4)
                    aattttctttaattgc  TA-rich tract