1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagtacacatgctaacaatcatgttatatttactgaccactgtttcgtgttttactttagtactaatgttgattgtgcttaccttgttgctgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAGAGGTTGAG
species | Oryza sativa |
transcript | LOC_Os08g42560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAEST: gi|86903796|gb|CI302442.1|CI302442
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAEST: gi|58684734|gb|CK073421.1|CK073421
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAEST: gi|88300311|gb|CI584730.1|CI584730
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAEST: gi|4715424|gb|AU056541.1|AU056541
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAEST: gi|58662078|gb|CK050758.1|CK050758
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
EST: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCT GACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
genomic: AATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctac ... tgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGA
cgtgttttactttagtactaatgttgattgtgcttaccttgttgctgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAGAGGTTGAG
ctgttct CT-rich tract
tttacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtacacatgctaacaatcatgttatatttactgaccactgtttcgtgttttactttagtactaatgttgattgtgcttaccttgttgctgttctacagGACAAAAGTGGTGTTCCACTTGTTGCTCATGAAAAATTCTCAAAGCCTAGAGAGGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - -catgcta
- - - - - - - - -atcatgt
- - - - - - - - - - - - - - -ttactga
- - - - - - - - - - - - - - - - - - - -ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc