Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcgaggatggatgttgatttatggttccatttgtagtttacttatattgcttttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG

Basic information

species Oryza sativa
transcript LOC_Os08g41810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G148744_T02 (Zea mays), 3'ss of exon 5
gtaagt-tctcgaggatggatgttgatttatggttccatt--tgtagtttact-tatatt-gcttttgtggc----cagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG
||| || ||     ||  ||||   ||| ||  ||  |    || ||  || | ||||||   |||||  |     |||| |||||||||||||| |||||| | ||||| ||||||||||||||||||||| | ||||||||||||
gtacgtatcgtattgaatgatggccattcattattgtaacagtgcagaatagtatatatttaattttgccgttctgcagCCTACATGTCCTCACCTTGCCACATTGAGCTGATCTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAG

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G702426_T01 (Zea mays), 3'ss of exon 5
gtaagttctcgaggatggatgttgatt--tatggttccatttg-tagtttactta-tattgcttttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG
||| ||     |||||||   || |||  |  |   |  ||   | || || ||| | ||||| || ||  |||||||||||||||| || |||||| | ||||| ||  ||||||||||||||||| | ||||||||||||
gtatgtatcgaaggatggtctttcattcttgcgacactgttgaatggtatatttaatgttgctgttctg--cagCTTACATGTCCTCCCCTTGCCACATTGAGCTGATTCTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAG

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 5
gtaagttctcgaggatg-----gatgttgatttatggttccatttgtagtttacttatattg---------cttttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG
||| ||    ||   ||       ||| || |||  |  | | |  |    | ||| | |||          |||| |   ||||||||||||| || || |||||| | ||||| || ||||| |||||||||||| | ||||||||||||
gtatgtcactgattttgttgatattgtcgacttaatggactact-attacatgcttttgttgagagagtcctttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S38_376V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------------------------------------------gtaagttctcgaggatggatgttgatttatggttccatttgtagtttacttatattgcttttgtggc----cagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG
                                                   ||    | |   | | | | ||  ||     |||    |   |  ||  |  | ||||   |  ||     |||||||||||||||| || |||||| | ||||| ||| | || |||||||||| | | ||||||||||||
gtaagtggctactccattcctactgttgtgttgtaattcgttatggaacctgtgtaatgtttggcacgtacgtgaatcccgtgttg---tcacaaattgatggtgttgcccattgggtgttgcagCTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88288852|gb|CI517983.1|CI517983
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88483888|gb|CI421159.1|CI421159
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88489400|gb|CI426672.1|CI426672
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88486185|gb|CI423456.1|CI423456
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88237554|gb|CI237403.1|CI237403
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88279621|gb|CI400621.1|CI400621
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTTTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88972978|gb|CI019597.1|CI019597
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|3761527|gb|C98775.1|C98775
EST:     GCCCAGAAGCAGAGACGCCGGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTT
genomic: GCCCAGAAGCAGAGACGCCGG-ACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTT
EST: gi|88505088|gb|CI432594.1|CI432594
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88469886|gb|CI407157.1|CI407157
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88547664|gb|CI477976.1|CI477976
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|38478888|gb|CF963021.1|CF963021
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88480986|gb|CI418257.1|CI418257
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88281357|gb|CI402753.1|CI402753
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88320361|gb|CI523104.1|CI523104
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88322586|gb|CI542914.1|CI542914
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88296945|gb|CI542657.1|CI542657
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|86873025|gb|CI327022.1|CI327022
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|33670175|gb|CF298414.1|CF298414
EST:     GCCCAGAAGCAGAGAATGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: GCCCAGAAGCAGAG-ACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88437723|gb|CI533680.1|CI533680
EST:     GGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: -GCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88286481|gb|CI524980.1|CI524980
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88237760|gb|CI237609.1|CI237609
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88906347|gb|CI375419.1|CI375419
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|38565668|gb|CK085121.1|CK085121
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|3767152|gb|AU031262.1|AU031262
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCANCCTGACCACGTCGAGCTTATCTTGTCAGAGAAGGAA
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTG-CCACGTCGAGCTTATCTTGTCAGAGAAGGAA
EST: gi|88464275|gb|CI532210.1|CI532210
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88515252|gb|CI442906.1|CI442906
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88461194|gb|CI547374.1|CI547374
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|86836934|gb|CI347501.1|CI347501
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88558425|gb|CI488909.1|CI488909
EST:     CCCCAGAAGCNAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: -CCCAGAAGC-AGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88282646|gb|CI404042.1|CI404042
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88486495|gb|CI423766.1|CI423766
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|425862|gb|D22540.1|D22540
EST:     TACCGTGCTCATGGACGCATCAAAC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: TACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88490224|gb|CI427496.1|CI427496
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88517129|gb|CI444611.1|CI444611
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88450754|gb|CI549840.1|CI549840
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88489112|gb|CI426384.1|CI426384
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88998114|gb|CI037999.1|CI037999
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88906020|gb|CI089606.1|CI089606
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGGCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|44673470|gb|CR286904.1|CR286904
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88470304|gb|CI407575.1|CI407575
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|86425044|gb|CI070141.1|CI070141
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88522050|gb|CI449783.1|CI449783
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88517291|gb|CI444945.1|CI444945
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|10930732|gb|AU161006.1|AU161006
EST:     AGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88506548|gb|CI434054.1|CI434054
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|27548383|gb|CA766455.2|CA766455
EST:     AGCCCAGAAGCAGAGACGCCGGACATATCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88440338|gb|CI549219.1|CI549219
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88374960|gb|CI521026.1|CI521026
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|86413432|gb|CI067837.1|CI067837
EST:     AGCCCAGAAGCAGAGACGTCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88837859|gb|CI371437.1|CI371437
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88519649|gb|CI447303.1|CI447303
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88283408|gb|CI404854.1|CI404854
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88508928|gb|CI436434.1|CI436434
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|86414312|gb|CI068715.1|CI068715
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|55410152|gb|CV722528.1|CV722528
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88506832|gb|CI434338.1|CI434338
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88508906|gb|CI436412.1|CI436412
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88283395|gb|CI404841.1|CI404841
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88556916|gb|CI487280.1|CI487280
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88322363|gb|CI540331.1|CI540331
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|11173119|gb|AU164622.1|AU164622
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88455152|gb|CI516790.1|CI516790
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|15852189|gb|BI804985.1|BI804985
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88554208|gb|CI484374.1|CI484374
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88520620|gb|CI448274.1|CI448274
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|29687038|gb|CB683313.1|CB683313
EST:     AGCCCAGAAGCATAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|58604680|gb|CK015208.1|CK015208
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88520147|gb|CI447801.1|CI447801
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88440435|gb|CI549316.1|CI549316
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88380120|gb|CI516107.1|CI516107
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88381115|gb|CI525885.1|CI525885
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGNACGCATCAATC                         CTTACATGTCCTCACCCTGCCACNTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88851310|gb|CI404362.1|CI404362
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|33670174|gb|CF298413.1|CF298413
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTC
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTC
EST: gi|88516539|gb|CI444193.1|CI444193
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGGTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88510798|gb|CI438304.1|CI438304
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88415844|gb|CI535924.1|CI535924
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
EST: gi|88380692|gb|CI521261.1|CI521261
EST:     AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATC                         CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG
genomic: AGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 41 (upstream exon), 37 (downstream exon)
Score: 71

AAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAACCAAGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCAATCgtaagttctc ... ttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatgttgatttatggttccatttgtagtttacttatattgcttttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG
    tgttgat  putative branch site (score: 71)
                                       ttgctttt  putative PPT
                          tagtttacttatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttctcgaggatggatgttgatttatggttccatttgtagtttacttatattgcttttgtggccagCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA