Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagagtacacatgtttacatacttgaaataaccgaggtcactataatcagcaactcatttaacttaaactacttgtgtgctgattttactgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGC

Basic information

species Oryza sativa
transcript LOC_Os08g41250.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41250.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G091503_T05 (Zea mays), 3'ss of exon 6
--ctagagtacacatgtttacatacttgaaataaccgaggtcactataatcagcaactcatttaacttaaactacttgtgtgc---tgatttt-actgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGC
   ||  | | |||||   | | || ||   |  |       ||| |    | || |  ||| |    |   | ||||||  |   || |||| ||  |  ||||| ||||||||  ||||||| ||||||||| |||| || || |||||| ||||||||||| ||||||||  ||||||||| ||||| || |||||||| |||
ctttaaggca-acatgcaga-aaacatg--tttgctagtccaactgtgtgaaacatcatattca--caaggtttcttgtgcccctctgtttttgaccatgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGATGAAGTCCAGCTTGGGGTCCCTGGAGAGGCATTCAACTTCAGCCAGTGC

upper sequence: LOC_Os08g41250.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G015642_T01 (Zea mays), 3'ss of exon 6
-ctagagtacacatgtttacatacttgaaataaccgaggtcactataatcagcaactcatttaacttaaactacttgtg---tgctgatttta-ctgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGC
  |  ||    |||||  | | || ||   |  |     | |||      | || |  ||| |    |   | ||||||   ||||| ||||  |  |  ||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||| |||| |||  ||||||||| ||||| || |||||||| |||
ctttaagggagcatgtaga-aaacatg--tttgcttgtctaactgcgtgaaacatcagattca--caaggtttcttgtgccctgctggttttggccatgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGATGAAGTCCAGCTCGGGGTCCCTGGAGAGGCATTCAACTTCAGCCAGTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89179899|gb|CI044178.1|CI044178
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|66914691|gb|CX101539.1|CX101539
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88206469|gb|CI206318.1|CI206318
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88238107|gb|CI237956.1|CI237956
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88991856|gb|CI034994.1|CI034994
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88486386|gb|CI423657.1|CI423657
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88367087|gb|CI561649.1|CI561649
EST:     AAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: AAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|163925831|gb|EG709627.1|EG709627
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86543120|gb|CI183326.1|CI183326
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86543119|gb|CI183325.1|CI183325
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86855157|gb|CI263224.1|CI263224
EST:     TTACAGCTCACTCAAAAGGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: TTACAGCTCACTCAAAA-GAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86861039|gb|CI326568.1|CI326568
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88470154|gb|CI407425.1|CI407425
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88457904|gb|CI542086.1|CI542086
EST:     GAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86869790|gb|CI322276.1|CI322276
EST:     ATTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86595517|gb|CI264614.1|CI264614
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|4879170|gb|AU063469.1|AU063469
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86511528|gb|CI154161.1|CI154161
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|87033038|gb|CI187662.1|CI187662
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88442197|gb|CI560438.1|CI560438
EST:     AGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: AGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|33685925|gb|CF314164.1|CF314164
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATTTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86594321|gb|CI251193.1|CI251193
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88472852|gb|CI410123.1|CI410123
EST:     CAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: CAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88444370|gb|CI555087.1|CI555087
EST:     TCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: TCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88217759|gb|CI217608.1|CI217608
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88903705|gb|CI089243.1|CI089243
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88524868|gb|CI453822.1|CI453822
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|33655898|gb|CF278512.1|CF278512
EST:     AGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: AGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|3760359|gb|C97613.1|C97613
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88384452|gb|CI553944.1|CI553944
EST:     AGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: AGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|33685924|gb|CF314163.1|CF314163
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGN
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTG-
EST: gi|86414979|gb|CI069382.1|CI069382
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|11118086|gb|AU163274.1|AU163274
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|29687540|gb|CB683815.1|CB683815
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|58031172|gb|CX728715.1|CX728715
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|86511780|gb|CI154413.1|CI154413
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88376460|gb|CI535564.1|CI535564
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|15858404|gb|BI811216.1|BI811216
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCCATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88450169|gb|CI541930.1|CI541930
EST:     AGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: AGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|88206590|gb|CI206439.1|CI206439
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|10931045|gb|AU161319.1|AU161319
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
EST: gi|218481364|gb|FG954015.1|FG954015
EST:     GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATT                         AAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA
genomic: GTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTgtatgttttt ... tgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcagcaactcatttaacttaaactacttgtgtgctgattttactgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGC
                                 tgctgat  putative branch site (score: 3)
                                       ttttact  CT-rich tract
            atttaacttaaacta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctagagtacacatgtttacatacttgaaataaccgaggtcactataatcagcaactcatttaacttaaactacttgtgtgctgattttactgttgtgtagAAACAAGCTCCGGGAATCAAGGAACGCCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - -acatgtt
- - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat