1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttcctgacaaggttgccctaaacccattttattttatgagtgctatcacttcatagttgtcagacaacctgaatgtcatggatatatattttcatgcagTATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTGATAGAGATCTCCTTGGATGGTGGCTTTGTGAGCGTCAGTGCAAAGAGGG
species | Oryza sativa |
transcript | LOC_Os08g40140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATGGTGGATTTGGAGCTATGCCAGGAGGTGAATCACACGCTGGGCAGA TATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTGEST: gi|58692470|gb|CK081157.1|CK081157
genomic: GGATGGTGGATTTGGAGCTATGCCAGGAGGTGAATCACACGCTGGGCAGAgtatgtcttt ... tttcatgcagTATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTG
EST: GGATGGTGGATTTGGAGCTATGCCAGGAGGTGAATCACACGCTGGGCAGA TATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTG
genomic: GGATGGTGGATTTGGAGCTATGCCAGGAGGTGAATCACACGCTGGGCAGAgtatgtcttt ... tttcatgcagTATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTG
atcacttcatagttgtcagacaacctgaatgtcatggatatatattttcatgcagTATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTGATAGAGATCTCCTTGGATGGTGGCTTTGTGAGCGTCAGTGCAAAGAGGG
tattttc CT-rich tract
atatatattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctgacaaggttgccctaaacccattttattttatgagtgctatcacttcatagttgtcagacaacctgaatgtcatggatatatattttcatgcagTATTTTGTTGTGTTGGCGCTCTCGCAATCACTGGCTCGTTGCATCACATTGATAGAGATCTCCTTGGATGGTGGCTTTGTGAGCGTCAGTGCAAAGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -cctgaca
- - - - - - - tgcccta
- - - - - - - - - - - - - - - - - - -tgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcatg