1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactataacatcattttaaaaactactactttgtttaaaatgaagtgagaatgtatgaatcataacttcaaaaaatgaattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTTGACATGGAAAAATTTCAAATTTGCAATAATTTCCGTTTTCCTTGGGCT
species | Oryza sativa |
transcript | LOC_Os08g38880.6 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAG TGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTEST: gi|218498616|gb|FG945329.1|FG945329
genomic: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAGgtactataac ... aattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTT
EST: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAG TGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTEST: gi|29640492|gb|CB645501.1|CB645501
genomic: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAGgtactataac ... aattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTT
EST: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAG TGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTT
genomic: CACGATGACAATGGCATCACTAATTCTCTGGAGATATTTGAGAAACCCAGgtactataac ... aattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTT
gtttaaaatgaagtgagaatgtatgaatcataacttcaaaaaatgaattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTTGACATGGAAAAATTTCAAATTTGCAATAATTTCCGTTTTCCTTGGGCT
tcataac putative branch site (score: 2)
ataacttcaaaaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactataacatcattttaaaaactactactttgtttaaaatgaagtgagaatgtatgaatcataacttcaaaaaatgaattatgcagTGGTTCGGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTTGACATGGAAAAATTTCAAATTTGCAATAATTTCCGTTTTCCTTGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA