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gtatgtcaaactatgctcttgtgatgctttttaaatatatgtaatgtgatttatatgtaacttcacatttgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACA
species | Oryza sativa |
transcript | LOC_Os08g36774.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAG ATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTEST: gi|29686073|gb|CB682348.1|CB682348
genomic: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGgtatgtcaaa ... tgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTT
EST: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAG ATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTEST: gi|218499091|gb|FG956697.1|FG956697
genomic: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGgtatgtcaaa ... tgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTT
EST: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAG ATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTT
genomic: ATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGgtatgtcaaa ... tgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTT
tgctttttaaatatatgtaatgtgatttatatgtaacttcacatttgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACA
tttaaatatatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaaactatgctcttgtgatgctttttaaatatatgtaatgtgatttatatgtaacttcacatttgacgtgtagATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA