1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaatgtaaacaattcaatggtgtataccttttctggcagtttcttgttctttgattccataatataataaaaggagctgagaatttcctcctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAG
species | Oryza sativa |
transcript | LOC_Os08g33850.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAG AGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCEST: gi|568839|gb|D39688.1|D39688
genomic: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAGgtatatatct ... cctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACC
EST: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAG AGGAATGTAGGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACEST: gi|38482258|gb|CF966306.1|CF966306
genomic: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAGgtatatatct ... cctgttgcagAGGAATGTAGG-TACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGAC
EST: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAG AGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCEST: gi|58691243|gb|CK079930.1|CK079930
genomic: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAGgtatatatct ... cctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACC
EST: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAG AGGAATGTAGGTACCATGAATGCCGTATGGGAGCEST: gi|58691215|gb|CK079902.1|CK079902
genomic: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAGgtatatatct ... cctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGC
EST: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAG AGGAATGTAGGTACCATGAATGCCG
genomic: CTTCTCCGAATGTAGATCTGCAGCACTAACACTATTGCAGAAAGGAAGAGgtatatatct ... cctgttgcagAGGAATGTAGGTACCATGAATGCCG
tgttctttgattccataatataataaaaggagctgagaatttcctcctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAG
ctttgat putative branch site (score: 35)
tttcctcctgttgc putative PPT
tttgattccataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatgtaaacaattcaatggtgtataccttttctggcagtttcttgttctttgattccataatataataaaaggagctgagaatttcctcctgttgcagAGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAG
- - - taaacaa
- - - - - - - - - - - - - - - -ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagctg