1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacggggtctccctttaatcatcacttcttttataactttgttttctttgatggctttgagcagttcccatgtgattaatgtagttttaccactttgtagGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCCAATGCAACTTCCTGGTCCTATCTGCGGAAAGGAACTT
species | Oryza sativa |
transcript | LOC_Os08g33076.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCACTTGTATTATTTGAAGATCTCTTGGTGTCCACAACACTTCCACCG GATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTEST: gi|29662692|gb|CB658967.1|CB658967
genomic: AATCACTTGTATTATTTGAAGATCTCTTGGTGTCCACAACACTTCCACCGgtacggggtc ... cactttgtagGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGT
EST: AATCACTTGTATTATTTGAAGATCTCTTGGTGTCCACAACACTTCCACCG GATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGT
genomic: AATCACTTGTATTATTTGAAGATCTCTTGGTGTCCACAACACTTCCACCGgtacggggtc ... cactttgtagGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGT
ctttgatggctttgagcagttcccatgtgattaatgtagttttaccactttgtagGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCCAATGCAACTTCCTGGTCCTATCTGCGGAAAGGAACTT
gattaat putative branch site (score: 14)
ttttacc putative PPT
attaatgtagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggggtctccctttaatcatcacttcttttataactttgttttctttgatggctttgagcagttcccatgtgattaatgtagttttaccactttgtagGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCCAATGCAACTTCCTGGTCCTATCTGCGGAAAGGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA