1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcaattggtgatggtgcatatacaatttttacactacatgaaaagcctgcatattctaaagctaatactgaacaaactactgtttatattcttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAA
species | Oryza sativa |
transcript | LOC_Os08g31840.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAN GCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAEST: gi|29666045|gb|CB662320.1|CB662320
genomic: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGgtaatgcaat ... cttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCA
EST: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAG GCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTEST: gi|218502114|gb|FG959502.1|FG959502
genomic: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGgtaatgcaat ... cttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGT
EST: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTCCGTATCAG GCTGGTATGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTT
genomic: TTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGgtaatgcaat ... cttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTT
cctgcatattctaaagctaatactgaacaaactactgtttatattcttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAA
tattctt CT-rich tract
tttatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaattggtgatggtgcatatacaatttttacactacatgaaaagcctgcatattctaaagctaatactgaacaaactactgtttatattcttgcaacagGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA