1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atagcatatacatgtacttgttctactaatatcttcatttttctgctactttctgcccttttcaatctgtttattgacattcttacctctgaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGGCGAGTTGAAGCACTCATGATTGGAGGGATTTTGTATTGCATCCACGATT
species | Oryza sativa |
transcript | LOC_Os08g29669.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGG CCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGGEST: gi|55414457|gb|CV726833.1|CV726833
genomic: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGGgttggtaact ... gaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGG
EST: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGG CCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTEST: gi|55430452|gb|CV728171.1|CV728171
genomic: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGGgttggtaact ... gaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTT
EST: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGG CCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGGEST: gi|29684805|gb|CB681080.1|CB681080
genomic: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGGgttggtaact ... gaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGG
EST: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGG CCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGG
genomic: GATGCCATCCTAAACAATGCTGGTGGTGATTCGACAGAAGGATTTTTTGGgttggtaact ... gaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGG
ctactttctgcccttttcaatctgtttattgacattcttacctctgaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGGCGAGTTGAAGCACTCATGATTGGAGGGATTTTGTATTGCATCCACGATT
ttcttac putative branch site (score: 18)
ttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcatatacatgtacttgttctactaatatcttcatttttctgctactttctgcccttttcaatctgtttattgacattcttacctctgaacctgcagCCCTCAACATGGCTTCAGAGTCTTTGAGATCATTGAAGATTTCTGCATCGGCGAGTTGAAGCACTCATGATTGGAGGGATTTTGTATTGCATCCACGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - -atacatg
- - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctt