1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG
species | Oryza sativa |
transcript | LOC_Os08g26870.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29660675|gb|CB656950.1|CB656950
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29659550|gb|CB655825.1|CB655825
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|27920437|gb|CB096245.1|CB096245
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|109974602|gb|DT806998.1|DT806998
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29629367|gb|CB634378.1|CB634378
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGTTGAAEST: gi|88831948|gb|CI014507.1|CI014507
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: TAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29663843|gb|CB660118.1|CB660118
genomic: TAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|3767979|gb|AU032006.1|AU032006
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29659488|gb|CB655763.1|CB655763
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29670738|gb|CB667013.1|CB667013
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29675966|gb|CB672241.1|CB672241
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29671385|gb|CB667660.1|CB667660
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|218504708|gb|FG953263.1|FG953263
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|84117164|gb|CD150931.1|CD150931
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29659844|gb|CB656119.1|CB656119
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29669212|gb|CB665487.1|CB665487
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|58687907|gb|CK076594.1|CK076594
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29664873|gb|CB661148.1|CB661148
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|218495687|gb|FG969804.1|FG969804
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCACGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29657113|gb|CB653388.1|CB653388
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29678163|gb|CB674438.1|CB674438
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|22306513|gb|BQ907735.1|BQ907735
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: TATATCAAAGTTGGTGAAGGAGATGGATTGATAAGATTGGGTTATGAG GTAAAACTGGTTCGGATAAATAAANAGAATTCAAGAAGCATACTGTGGCTGEST: gi|29658491|gb|CB654766.1|CB654766
genomic: TATATC-AAGTT-GTGAAGGAGAT-GATTGATAAGA-TGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAA-AGAATTCAAGAAGCATACTGT-GCTG
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|58692668|gb|CK081355.1|CK081355
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29629366|gb|CB634377.1|CB634377
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29668681|gb|CB664956.1|CB664956
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29660157|gb|CB656432.1|CB656432
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29669928|gb|CB666203.1|CB666203
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29672180|gb|CB668455.1|CB668455
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|33683462|gb|CF311701.1|CF311701
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGGG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29657533|gb|CB653808.1|CB653808
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|58605333|gb|CK033366.1|CK033366
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAAEST: gi|29659233|gb|CB655508.1|CB655508
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
taccactcattcatttatttattccttccatcattgtgtttgattttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG
gtttgat putative branch site (score: 5)
tcattcatttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC