1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agacaagaagtactttatccaaagtctgccctgctttatgttcatttcaaactgcggagaataggtttcagtagttgaccatcgtgtttttgtttgtcagGTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGACACGCTACTGGAGAAGGCATGCAACATAGTATCTGAGCAACTGAATGGCT
species | Oryza sativa |
transcript | LOC_Os08g25799.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTCAGAGCACAGATGGAAGTGCAACGAAAATTGCATGAACAAGTGGAG GTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGACEST: gi|117243411|gb|CT843450.1|CT843450
genomic: CACTCAGAGCACAGATGGAAGTGCAACGAAAATTGCATGAACAAGTGGAGgtaagtaaag ... tgtttgtcagGTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGAC
EST: CACTCAGAGCACAGATGGAAGTGCAACGAAAATTGCATGAACAAGTGGAG GTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGAC
genomic: CACTCAGAGCACAGATGGAAGTGCAACGAAAATTGCATGAACAAGTGGAGgtaagtaaag ... tgtttgtcagGTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGAC
ttcaaactgcggagaataggtttcagtagttgaccatcgtgtttttgtttgtcagGTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGACACGCTACTGGAGAAGGCATGCAACATAGTATCTGAGCAACTGAATGGCT
agttgac putative branch site (score: 28)
tttttgttt putative PPT
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacaagaagtactttatccaaagtctgccctgctttatgttcatttcaaactgcggagaataggtttcagtagttgaccatcgtgtttttgtttgtcagGTCCAGAGGCATGTACAGATCCGAATGGAAGCGTACCAGAACTACATCGACACGCTACTGGAGAAGGCATGCAACATAGTATCTGAGCAACTGAATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-gacaagaa
- - - - - - - - atccaaa
- - - - - - - - - - - - - - -cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - actgcgg