1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaccaaatcaatctttgcacatctgtcatatagcctggagttctgccgatccattgatttgcacttaattcgaacaaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACA
species | Oryza sativa |
transcript | LOC_Os08g19650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|29685658|gb|CB681933.1|CB681933
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|29639210|gb|CB644219.1|CB644219
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|58687578|gb|CK076265.1|CK076265
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGC----- -AA-G-AGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|86885862|gb|CI295885.1|CI295885
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|113930980|gb|DQ884077.1|DQ884077
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|58591360|gb|CF989668.1|CF989668
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAG TAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTEST: gi|38473261|gb|CF957393.1|CF957393
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
EST: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGC----- -AA-G-AGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
genomic: TGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGgtaccaaatc ... caaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACT
atagcctggagttctgccgatccattgatttgcacttaattcgaacaaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACA
acttaat putative branch site (score: 15)
aacaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaatcaatctttgcacatctgtcatatagcctggagttctgccgatccattgatttgcacttaattcgaacaaaaaaaagTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA