1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatgcaatttaaaccatgtgtattttctgaatttacatgtttacccacgttagtctgatcattttccctatgtcccctttcacttttttggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTCATGCACTTTCTCAAGCATGTGCACCTGGAGTCATTTTGAT
species | Oryza sativa |
transcript | LOC_Os08g08000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAG GGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTEST: gi|29634713|gb|CB639722.1|CB639722
genomic: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAGgttagttttt ... ggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTT
EST: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAG GGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTEST: gi|29644348|gb|CB649355.1|CB649355
genomic: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAGgttagttttt ... ggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTT
EST: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAG GGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTEST: gi|58654091|gb|CK042771.1|CK042771
genomic: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAGgttagttttt ... ggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTT
EST: TTGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAG GGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTT
genomic: TCGAGAAAATAATATTCCTTGGTCAAAAGTTGCATCCAAATCGTAGAAAGgttagttttt ... ggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTT
ccacgttagtctgatcattttccctatgtcccctttcacttttttggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTCATGCACTTTCTCAAGCATGTGCACCTGGAGTCATTTTGAT
gtctgat putative branch site (score: 13)
ttttccctatgtcccc putative PPT
atcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcaatttaaaccatgtgtattttctgaatttacatgtttacccacgttagtctgatcattttccctatgtcccctttcacttttttggtcatgcagGGTGAGAGCCAAGAGCTCAAGCAGATAAACCCACTCCATTCTTCTCATCTTCATGCACTTTCTCAAGCATGTGCACCTGGAGTCATTTTGAT
atatgca
- - - - - - - -catgtgt
- - - - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - - -acatgtt