1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgatgaatgcacggtctcttttaagtctttaacatgatttgtcttagcctgcttgaaagggcattattggattgtagtatgtagaaaatgaaattctgattgacatatttcatttgatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGG
species | Oryza sativa |
transcript | LOC_Os08g06200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCAGAAGCAGAAAGGAAAAAGCGTGCCCAAATCCTTGAATCAGAAG GTGCTATGTTGGATCAGTCAAAGGGCGCAAAGGGTGAGGCTGAEST: gi|25800628|gb|CA756589.1|CA756589
genomic: GCAAGCAGAAGCAGAAAGGAAAAAGCGTGCCCAAATCCTTGAATCAGAAGgtgatgaatg ... gatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGGGTGAGGCTGA
EST: GGAAAAAGCGTGCCCAAATCCTTGAATCAGAAG GTGCTATGTTGGATCAGGCAAATCGCGCAAAGGEST: gi|88574684|gb|CI666453.1|CI666453
genomic: GGAAAAAGCGTGCCCAAATCCTTGAATCAGAAGgtgatgaatg ... gatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGG
EST: GCAAGCAGAAGCAGAAAGGAAAAAGCGTGCCCAAATCCTTGAATCAGAAG GTGCTATGTNGGATCAGGCAAATCGCGCAAAGG
genomic: GCAAGCAGAAGCAGAAAGGAAAAAGCGTGCCCAAATCCTTGAATCAGAAGgtgatgaatg ... gatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGG
attgtagtatgtagaaaatgaaattctgattgacatatttcatttgatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGG
tcttcc CT-rich tract
tagaaaatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgaatgcacggtctcttttaagtctttaacatgatttgtcttagcctgcttgaaagggcattattggattgtagtatgtagaaaatgaaattctgattgacatatttcatttgatcttccagGTGCTATGTTGGATCAGGCAAATCGCGCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG