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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgactaaatttactataagtatacagattacatacatttaacagaaatagtggtaaacttaaatgggaatactgatattttcatttgcattcttaattcagGACTGAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTGGATGCTCGACAACAAT

Basic information

species Oryza sativa
transcript LOC_Os08g03560.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03560.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G019225_T01 (Zea mays), 3'ss of exon 6
gtacgactaaatttactataagtatacagattacatacatttaacagaaatagtggtaaacttaaa----tgggaatactgatattttcatttgcattcttaattcagGACTGAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTGGATGCTCGACAACAAT
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gtgcgactgagtttaccg-aaatataatga--gcatgcatttacctaata-actgttacccataaagttgcaaaagaactgaaaattttattggcattcttaattcagGACCGAGAGAGGTGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAGGCAGTGCAAGGAGTTCAATATCCCTACAGACTGGATGCTTGATAACAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33811209|gb|CF331494.1|CF331494
EST:     CGCCTTCCATGTGACATTGCACTGAAGAAAATGGTTACAATATCAGAAAA                         GACTGAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAG
genomic: CGCCTTCCATGTGACATTGCACTGAAGAAAATGGTTACAATATCAGAAAAgtacgactaa ... cttaattcagGACTGAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtggtaaacttaaatgggaatactgatattttcatttgcattcttaattcagGACTGAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTGGATGCTCGACAACAAT
                                         cattctt  CT-rich tract
                     aatactgatatttt  TA-rich tract