1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttatcaattcttgacatattgctataatgttatcttaaaacaggaaatatctatctttttgtatacatctgaagtgatttattgtcttctctttcgtagTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACA
species | Oryza sativa |
transcript | LOC_Os08g01740.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTG TCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCAEST: gi|58602320|gb|CK012848.1|CK012848
genomic: GAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGgtatgtatca ... tctttcgtagTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCA
EST: AAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTG TCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCA
genomic: AAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGgtatgtatca ... tctttcgtagTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCA
aaatatctatctttttgtatacatctgaagtgatttattgtcttctctttcgtagTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACA
tttattgtcttctctt CT-rich tract
tatctttttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatcaattcttgacatattgctataatgttatcttaaaacaggaaatatctatctttttgtatacatctgaagtgatttattgtcttctctttcgtagTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -attcttg
- - - - - - - - -tattgct
- - - - - - - - - - - - - - - - - - -aaaacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctga