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gtatgatgtgtttcttatttatttatctgtccgtctacaattttttttgaagtttccgtaatcttatttgacagtttaaatttgatctggcgtgtatttaactgattaaacatcatggaatacactatatagtatttcttcacattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCAGATGCAGTATCCTTAACTGTTTCCTTGACAAGCTCCGATGGTCTGCAGA
species | Oryza sativa |
transcript | LOC_Os07g48750.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAACCCTGGTTATTGGGGCATG AATATTGAAAGEST: gi|88298479|gb|CI563474.1|CI563474
genomic: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATGgtatgatgtg ... cattttccagAATATTGAAAG
EST: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATG AATATTGAAAGAAGGANGGTTTATAAGGTGGGCCTGCACATTAGATCTTCAEST: gi|3768410|gb|AU032437.1|AU032437
genomic: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATGgtatgatgtg ... cattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCA
EST: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATG AATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCAEST: gi|88413302|gb|CI581317.1|CI581317
genomic: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATGgtatgatgtg ... cattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCA
EST: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATG AATATTGAAAGAAGAAGGGTTTTTA-GGTGGGC-TGCACATTA
genomic: ACTGCCCTTCTGGAGGTGTAGGAGTCTACAATCCTGGTTATTGGGGCATGgtatgatgtg ... cattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTA
ttaactgattaaacatcatggaatacactatatagtatttcttcacattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCAGATGCAGTATCCTTAACTGTTTCCTTGACAAGCTCCGATGGTCTGCAGA
aactgat putative branch site (score: 4)
tttcttcacattttcc putative PPT
tatatagtatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgtgtttcttatttatttatctgtccgtctacaattttttttgaagtttccgtaatcttatttgacagtttaaatttgatctggcgtgtatttaactgattaaacatcatggaatacactatatagtatttcttcacattttccagAATATTGAAAGAAGAAGGGTTTATAAGGTGGGCCTGCACATTAGATCTTCAGATGCAGTATCCTTAACTGTTTCCTTGACAAGCTCCGATGGTCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG