1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggacctggtgtatccgaccgaacgacgtttcacctgttgccgcgccagatgcagtgttgctaatgtttaccatggcggatttgcttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGGAGGAATCCACCGGAGAGTCCTCCAGCCCTAACAC
species | Oryza sativa |
transcript | LOC_Os07g48410.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCAEST: gi|58603862|gb|CK014390.1|CK014390
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58657427|gb|CK046107.1|CK046107
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58676590|gb|CK065277.1|CK065277
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58607975|gb|CK036008.1|CK036008
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|29666734|gb|CB663009.1|CB663009
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58673342|gb|CK062028.1|CK062028
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|88221815|gb|CI221771.1|CI221771
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58599584|gb|CK010112.1|CK010112
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAEST: gi|58659889|gb|CK048569.1|CK048569
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|86253323|gb|CI058248.1|CI058248
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: ACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|58612737|gb|CK040449.1|CK040449
genomic: ACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|86257029|gb|CI061792.1|CI061792
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAEST: gi|29681057|gb|CB677332.1|CB677332
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
EST: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCG GGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
genomic: CGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGgtaggacctg ... ttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCA
ccgcgccagatgcagtgttgctaatgtttaccatggcggatttgcttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGGAGGAATCCACCGGAGAGTCCTCCAGCCCTAACAC
tgctaat putative branch site (score: 2)
tttgctt putative PPT
taatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggacctggtgtatccgaccgaacgacgtttcacctgttgccgcgccagatgcagtgttgctaatgtttaccatggcggatttgcttgcttatagGGGAGCTCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGGAGGAATCCACCGGAGAGTCCTCCAGCCCTAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA