1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtaccactatatttggtgctttcttcttcatatgaaagatgcaactgttatttcttgcaatgagttaaaattacaatatgtcaaactttgatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGATAATGATACTGCACCTGAAGAGGTTTAGTTATGGAAGTCATGGCTGCA
species | Oryza sativa |
transcript | LOC_Os07g46660.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGEST: gi|218479637|gb|FG956050.1|FG956050
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGEST: gi|66919105|gb|CX105953.1|CX105953
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGAEST: gi|27554287|gb|CA998187.1|CA998187
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGA
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGEST: gi|29628666|gb|CB633677.1|CB633677
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGEST: gi|25803696|gb|CA759657.1|CA759657
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
EST: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAG GCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
genomic: TGTTTGCTGCTCCTGAATCTTTGGAAGGATACAGAACAGCTGCTGGAAAGgtagcttgtt ... gatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAG
ctgttatttcttgcaatgagttaaaattacaatatgtcaaactttgatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGATAATGATACTGCACCTGAAGAGGTTTAGTTATGGAAGTCATGGCTGCA
ctttgat putative branch site (score: 5)
aatgagttaaaattac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaccactatatttggtgctttcttcttcatatgaaagatgcaactgttatttcttgcaatgagttaaaattacaatatgtcaaactttgatcttgcagGCTGGGTTGGTGACGGCTAGAAAATCAGTGAAGATACACTCACTTTCAAAGATAATGATACTGCACCTGAAGAGGTTTAGTTATGGAAGTCATGGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-gtaccac
- - - - - - - -ggtgctt
- - - - - - - - - - - - - - - - - - - gatgcaa