Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

Basic information

species Oryza sativa
transcript LOC_Os07g41750.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtttg-tacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagct-tgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
||||| | | |   ||| |   |||    ||  |||      | |       |||||| | | |  |  |||    || ||   ||||  ||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||| ||||  |  |||||||| ||| | ||||| || || |  |
gtttggtgcttggtatc-agatgttatcttattatgcaaacatataac-aaaatagctgttagtaatactct----agttg--acttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
------------------------gtttgtacataaaatccatc-cgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                          || |  |||  ||  |||   ||||  |      ||  | |    ||  |||     ||   |  |  ||   |  |  ||  ||  |   ||||||| || || |||||||| ||||| ||||||||||||||||| ||||| || || || || |  |||||  | || |||||||| || |||||| | |
gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA16G33240.1 (Glycine max), 3'ss of exon 5
-----------------------------------------gtttgtac-ataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgct-tcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                          || | || |  |  | |||    |||  | |  |  |    ||      |||| |    || |  |   | |     | || |||| | |  ||||||| || ||||| ||||| ||||| ||||||||||||||||| || || || || || || |  |||||  | || |||||||| || |||||  |||
gtttgattttttattcttcatagttaactgatggaatttcttttagcactaggattttcatgttgttggctcattttctttcttcatggattgatggtgctaaatgctaattgattccttactgtcttatatatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACCC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA10G26890.1 (Glycine max), 3'ss of exon 5
-------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                         | || |  |||  ||  |||  |||   |    |||||   | |   | ||| |   |||   |  ||  ||     || | ||   |   ||||||| || || |||||||| ||||| ||||||||||||||||| ||||| || || || || |  |||||  | || |||||||| || |||||| | |
gtttttttatcttctattctttgtagattcttgatactatttatctcttt---tgggttgttg--attttactatgaaaagatgatgctaattggtat--tttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 5
gtttgtacataaaatccatccg---tttgaataaaatgttgctgtctccttgtgatagcttgaattt-------ttttcttagaagctgcttcttgttttc----agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
|||| | | |  | ||  |      | |  |||  || |  || | |     || |   || | | |       |  |  ||   | |  || ||| |  |    ||||||| || || |||||||| ||||| ||||||||||||||||| ||||| || || || || |  |||||  | || |||||||| || |||||| | |
gtttttgcttctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
-------------------------------------gtttgtacataaaatc--catccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                      || |    ||  ||   ||| | ||||  | |  |  |  | |    |    || |    || ||  | || |  |     ||| ||| || |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || || || || || |  |||||  | || |||||||| || |||||  | |
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatgg---aaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 5
----------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttt---tcttagaagctgcttctt-gttttc----agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                         |||      |  |        ||    |     | |  | | |  |  | || | ||||  ||  |   |   | ||| |  |||||  || ||    ||||||| || ||||| ||||| ||||| ||||||||||||||||| || || || || || || |  |||||  | || |||||||| || |||||  | |
gtttgttttttttttttttttctacatagccacctgattgattttctttcagcactaggattttcatgttgttggctcattttttttcttaatggattgatgttgctaaatgcaaaaagatttttcttcattgtcctatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgct---tcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
         | |  | | || |  |   |    | ||   || |   |   | | |   ||  | |   | |   | || |    |   | |  |||||||| |||| || ||||| ||| |||||||||||||||| || |||||||    |||||||| ||| || || || ||| |||| | ||| ||| | |
--------gtgagtttcgtctgagttgttct--tattagagt-taagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATTCTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
-----gtttgtaca-taaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgctt---cttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
      | |  ||| |  || ||      |||||| | ||  | |      || |||| | ||||  |    |     ||| ||| ||   |   | | ||||||||||| ||| | ||||| ||||| |||||||| ||||| || |||||||| |||||||| ||||| || || || ||| |||| | ||||||| | |
gtcagttcttcacagtggaaacctgtttcttgaatcacattctac------ctagtgagatcttgtgtaacct-----gaatctggttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaattt--ttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                          |||   |     || |  | || | |   | |  |||||| |  | |  |   |  |      |  |  | ||      |||||    |    |||||||| || ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| || |  || ||| | || |||||||| ||||||||  | |
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgct-taccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtac-ataaaatccatccgttt-gaataaaatgtt-gctgtctccttgtgatagcttgaatttttttcttaga----agctgcttcttgttttc----------agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
||   | | ||||  ||     |||| |  | || |||| |||| | | |  ||||  | | | ||| ||| ||  |     |||| || |  |||||          |||| || || ||||| ||||||||||| ||||| || |||||||| ||||||||||| || || |  ||||| || || ||||| || || || ||  | |
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
-----gtttgtacataaaatcc-atccg-tttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
       |  | |||     |  | | | ||||| |  ||||||   ||   ||  |  |  |     |||||   ||        |||  |     ||||||||  ||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || || |  || ||| |||| |||||||| ||||||||  |||
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttc----------ttgttttc-agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                                 | |   | || | | | |   |   | | |  | |  | |  |    || ||   || | |||     |  ||| |||  ||           ||| ||| |||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  | || ||| | || |||||||||   |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgc-ttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                                | ||   | ||   ||  |  ||||  |  |||   |   || | |  ||  |  ||  ||| | | |   | | | | | || || ||||||||||||  ||||||| || || ||||| ||||| || ||||| || ||||||||||||||||| ||||| ||| | || ||| | || |||||||||   |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtc--tttgttttcaagaaaaaatctcgtttgcaagt--tgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttg------aatttttttcttagaagct--gcttct-------tgtttt--cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                         ||| ||    |   | ||     ||   | || | |||   | || ||  ||  ||| |      | |||||| ||  ||| ||  | || |       ||||||  ||||| ||| |||| || ||||| || || |||||||| ||||| |||||||||||||||||||| ||||||||  | || ||| | ||||||||||||   |
gtattcttgacagctttttaatcttgttagtctcaaccgttcactgagtttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcagGGAGTGTTGGGCATCAAGGTTAAAATCATGCTTGACTGGGACCCGAAGGGCAAGCAAGGACCTATGACTCCCCTTCCAGATGTGGTTACCATCCATATGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------------------------------gtttgtacataaaatccatccgtt---tgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                                                       |   | ||| | |   |   |||   | | | |  | |   | |  | ||| | |    |||   |   |    ||||||  | |||  || ||||| ||| ||||||| ||||||||||| ||||| || |||||||| || ||||| |||||||| ||||||||  | || ||| | |||||||||||    |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttg-gctctactgagcctgaatt---gaagctattcctt-cttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------gtttgtacataaaatccatc-cgtttgaataaaatgttgctgtctccttgtgatagctt---------gaatttttttcttagaagctgctt--cttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                      ||  | |   | | | ||  |  ||  | ||  | |     | |   ||  | | | |          ||| |    |||   || ||  |  |||  | | ||||| ||  ||||||| ||||| ||||||||||| || ||||| || |||| |||||||||| |  ||||||   | || ||| | || ||||| ||    |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacagaaatatgagacttgtcagttgtcttccttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------gtttgtacataaaatccatc-cgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttct--tagaagctgcttct----tgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                  ||  ||   ||    |  |  |||   |  || || ||| |   |  | |   |  |   | |   | |    | || | |   | |    ||||| ||||| |||||||| |||||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||  | || ||| | || || || ||    |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88994541|gb|CI117693.1|CI117693
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|33661397|gb|CF292364.1|CF292364
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88420466|gb|CI562100.1|CI562100
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86599610|gb|CI253595.1|CI253595
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86418211|gb|CI032420.1|CI032420
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88983289|gb|CI028526.1|CI028526
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88206709|gb|CI206558.1|CI206558
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86823017|gb|CI253952.1|CI253952
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86528337|gb|CI168543.1|CI168543
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86598910|gb|CI355527.1|CI355527
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88491318|gb|CI428590.1|CI428590
EST:     CTGTTAACTTGTATATTGACTCTACTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|55431604|gb|CV728818.1|CV728818
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88206060|gb|CI205909.1|CI205909
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88209932|gb|CI209781.1|CI209781
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|3759681|gb|C96939.1|C96939
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88955442|gb|CI091534.1|CI091534
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|87015933|gb|CI279685.1|CI279685
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86416739|gb|CI030750.1|CI030750
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88482674|gb|CI419945.1|CI419945
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86545284|gb|CI185490.1|CI185490
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88216637|gb|CI214737.1|CI214737
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88907969|gb|CI090565.1|CI090565
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86824581|gb|CI264913.1|CI264913
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88237411|gb|CI237260.1|CI237260
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86546712|gb|CI186918.1|CI186918
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86522609|gb|CI162815.1|CI162815
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88487890|gb|CI425161.1|CI425161
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86501649|gb|CI144282.1|CI144282
EST:     TGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACCAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGG
genomic: TGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGAC-AGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGG
EST: gi|11443003|gb|BF430890.1|BF430890
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|58676042|gb|CK064729.1|CK064729
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86416691|gb|CI030702.1|CI030702
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88237087|gb|CI236936.1|CI236936
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88480718|gb|CI417989.1|CI417989
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88828939|gb|CI073809.1|CI073809
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88962995|gb|CI025481.1|CI025481
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88982856|gb|CI028269.1|CI028269
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88482477|gb|CI419748.1|CI419748
EST:     CTGTTAACTTGTATATTGACTCTACTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86532591|gb|CI172797.1|CI172797
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88206670|gb|CI206519.1|CI206519
EST:     CTGTTAACTTGTATACTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|6012796|gb|AU078613.1|AU078613
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88216681|gb|CI214781.1|CI214781
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88206737|gb|CI206586.1|CI206586
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|25801300|gb|CA757261.1|CA757261
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|2280569|gb|C25064.1|C25064
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGG-C
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88209026|gb|CI208875.1|CI208875
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88242074|gb|CI241923.1|CI241923
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|218492225|gb|FG955391.1|FG955391
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86510759|gb|CI153392.1|CI153392
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|88995801|gb|CI037144.1|CI037144
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
EST: gi|86872835|gb|CI325439.1|CI325439
EST:     CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAG                         GGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC
genomic: CTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 75 (downstream exon)
Score: 65

TGCTAAATCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTTATCCTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacat ... ttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC
                                      ctgcttcttgttttc  CT-rich tract
                  ttgaatttttttctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG