1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaactcttgcaccatgataacaatttctaccccctttgttttcatcatcaatgttcttatcttatcactttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAGCTTTCGCTTTCACCTGAAAACTATTTGTTCCGG
species | Oryza sativa |
transcript | LOC_Os07g40260.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAG GAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGEST: gi|86596688|gb|CI286601.1|CI286601
genomic: CGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAGgtaactcttg ... ttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGG
EST: CGTGGCCCAGATCCAAATTATAAAGACATCCGCTTTGCAGGTGCTGGAAG GAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGEST: gi|58611100|gb|CK038812.1|CK038812
genomic: CGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAGgtaactcttg ... ttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGG
EST: CGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAG GAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGG
genomic: CGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAGgtaactcttg ... ttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGG
ttctaccccctttgttttcatcatcaatgttcttatcttatcactttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAGCTTTCGCTTTCACCTGAAAACTATTTGTTCCGG
ctttaccttc CT-rich tract
ttatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcttgcaccatgataacaatttctaccccctttgttttcatcatcaatgttcttatcttatcactttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAGCTTTCGCTTTCACCTGAAAACTATTTGTTCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC