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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaacgtaaatagtcatctgtgtttccatattgtaaatcctctcaaaatatttccattttctgtgttaataaagtactgatggcagcttctgttgcacagGTCACAAGCGTCCCCTTGATGTTACCTCTGTTGTGCAGGGAAAGACAAGGTTTTTTAGTGTCTTGATGCTTACTTGGG

Basic information

species Oryza sativa
transcript LOC_Os07g37580.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g37580.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G057475_T03 (Zea mays), 3'ss of exon 5
-------------------ttaacgtaaatagtcatctgtgtttccatattgtaaatcctctcaaaatatttccattttctgtgttaata-aagtactgatggcagctt----ctgttgcacagGTCACAAGCGTCCCCTTGATGTTACCTCTGTTGTGCAGGGAAAGACAAGGTTTTTTAGTGTCTTGATGCTTACTTGGG
                   ||   |  |    |||||   |   ||| ||  |   ||   |||  || |  ||  ||| | ||||   | || | |||||| ||||||    ||||| ||||||||| || ||| | ||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||
gccagtattttctcctcgttttttgccacctttcatcca-gcagccacatcatc--tctcttcattatctcacccatttatatgtttgaacaattgctgatg-cagcttatttctgtttcacagGTCATAAACGTGCACTTGATGTTACTTCTGTTGTGCAGGGAAACACAAGGTTCTTTAGTGTCCTGATGCTTACATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatttccattttctgtgttaataaagtactgatggcagcttctgttgcacagGTCACAAGCGTCCCCTTGATGTTACCTCTGTTGTGCAGGGAAAGACAAGGTTTTTTAGTGTCTTGATGCTTACTTGGG
                             tactgat  putative branch site (score: 2)
                                         cttctgtt  putative PPT
                    ttaataaagta  TA-rich tract