1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaactccagcaattttatctgacaaaaatatccttttgttatggaccattttattatttaaattattaagagcaattatgtttctttttctattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGA
species | Oryza sativa |
transcript | LOC_Os07g29630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|33683745|gb|CF311984.1|CF311984
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|13165220|gb|AU174017.1|AU174017
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|88848803|gb|CI087325.1|CI087325
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|88272762|gb|CI386617.1|CI386617
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAACCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|33682994|gb|CF311233.1|CF311233
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|87018162|gb|CI277744.1|CI277744
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|8856995|gb|AU094313.1|AU094313
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATNTGGAANAGEST: gi|86595612|gb|CI264709.1|CI264709
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGEST: gi|86495728|gb|CI138361.1|CI138361
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
EST: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAG CGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
genomic: TGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGgtagatgctt ... tattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAG
ccattttattatttaaattattaagagcaattatgtttctttttctattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGA
ttatgtttctttttct CT-rich tract
ttattatttaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactccagcaattttatctgacaaaaatatccttttgttatggaccattttattatttaaattattaagagcaattatgtttctttttctattttgtagCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- -ctccagc
- - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagcaa