1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tccacatgttcagtcattcttcttttgaaatgcctaattatgtagaaacaactgtttaattctctctatttttaaccaaacaaacttctgcctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCGGTGGTTTGAATAAGGCTGATATCAAAGATATCTTGGAGCGCGCTTCTAG
species | Oryza sativa |
transcript | LOC_Os07g26610.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG CAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCGEST: gi|88298548|gb|CI563543.1|CI563543
genomic: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAGgtactattcc ... cctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCG
EST: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG CAAGTCATCTTCCATACAACCGGGATGGTCTCAAATTTTTTACAAGTGCCGEST: gi|29660678|gb|CB656953.1|CB656953
genomic: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAGgtactattcc ... cctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCG
EST: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG CAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCG
genomic: AGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAGgtactattcc ... cctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCG
aaacaactgtttaattctctctatttttaaccaaacaaacttctgcctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCGGTGGTTTGAATAAGGCTGATATCAAAGATATCTTGGAGCGCGCTTCTAG
ttttaac putative branch site (score: 2)
cttctgcctttcac putative PPT
tttaattctctctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacatgttcagtcattcttcttttgaaatgcctaattatgtagaaacaactgtttaattctctctatttttaaccaaacaaacttctgcctttcacagCAAGTCATCTTCCATACAACCGGAATGGTCTCAAATTTTTTACAAGTGCCGGTGGTTTGAATAAGGCTGATATCAAAGATATCTTGGAGCGCGCTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - catgttc
- - - - - - - cattctt
- - - - - - - - - - - - - - aatgcct
- - - - - - - - - - - - - - - - - - - - - - - aacaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa